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Updated: Aug 2, 2025

Identification of Rare Bacterial Pathogens by 16S rRNA Gene Sequencing and MALDI-TOF MS
Published on: July 11, 2016
Emerging Bacterial Pathogens in the COVID-19 Era: Chryseobacterium gleum -A Case in Point
Archana Angrup1, Bhawna Sharma1, Inderpaul Singh Sehgal2
1Department of Medical Microbiology, Postgraduate Institute of Medical Education and Research, Chandigarh, India.
Abstract:
Introduction In the ongoing severe acute respiratory syndrome coronavirus 2 pandemic, a long hospital stay and empirical broad-spectrum antibiotics make the patients prone to acquire nosocomial infections especially with unconventional organisms, and Chryseobacterium gleum is one such rare nosocomial pathogen. Methods The given study is a case-series-based study conducted from September 2020 to April 2021 in which clinically suspected pneumonia patients who recovered from coronavirus disease 2019 (COVID-19) were included. Results Seventeen C. gleum isolates were obtained in pure culture from the tracheal aspirates of nine COVID-19 patients (including repeat samples to rule out colonization) within a period of eight months (September 2020-April 2021). Our records showed that there has been an increase in the number of isolates of C. gleum obtained in respiratory samples in 2020. We also did a review of literature of all the cases of C. gleum pneumonia reported till now. Conclusion To the best of our knowledge, this is the first study reporting the isolation of this rare pathogen from COVID-19 patients with clinical significance in a large cohort of patients. Therefore, it becomes important to consider this pathogen as a significant cause of respiratory infections, especially in patients recovered post COVID-19.
Insights
Chryseobacterium gleum is a rare nosocomial pathogen that can cause pneumonia in patients recovering from COVID-19. This study highlights its increasing isolation from respiratory samples in post-COVID-19 patients.
Area of Science:
- Infectious Diseases
- Microbiology
- Critical Care Medicine
Background:
- Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) pandemic leads to prolonged hospitalization and broad-spectrum antibiotic use, increasing risks of nosocomial infections.
- Unconventional organisms, such as Chryseobacterium gleum, pose a growing threat as nosocomial pathogens in vulnerable patient populations.
Purpose of the Study:
- To investigate the incidence and clinical significance of Chryseobacterium gleum infections in patients recovering from COVID-19.
- To determine if Chryseobacterium gleum is an emerging cause of pneumonia in the post-COVID-19 setting.
Main Methods:
- A case-series study was conducted from September 2020 to April 2021.
- Included were patients with clinically suspected pneumonia who had recovered from COVID-19.
- Tracheal aspirates were analyzed for Chryseobacterium gleum isolates.
Main Results:
- Seventeen Chryseobacterium gleum isolates were identified in pure culture from nine COVID-19 patients.
- Isolates were obtained from tracheal aspirates over an eight-month period.
- A literature review indicated an increase in Chryseobacterium gleum respiratory isolates in 2020.
Conclusions:
- This is the first study to report the isolation of Chryseobacterium gleum from COVID-19 patients, demonstrating clinical significance.
- Chryseobacterium gleum should be considered a potential cause of respiratory infections, particularly in patients recovering from COVID-19.
- The findings underscore the importance of identifying rare pathogens in post-COVID-19 respiratory infections.
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