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Introduction to Actin01:26

Introduction to Actin

5.2K
Actin is a highly conserved cytoskeletal protein found abundantly in eukaryotic cells. It constitutes 10% weight of the total cellular protein in muscle cells, while in non-muscle cells, it is lower and makes up around 1–5 percent of the total cell protein. Actin found in the unicellular amoebae and complex multicellular animals is around 80% similar, demonstrating their conservation over a billion years of evolution.  Actin coding genes are conserved within species and across...
5.2K
Studying the Cytoskeleton01:17

Studying the Cytoskeleton

6.3K
The cytoskeletal architecture can be studied using different microscopic and biochemical techniques. Electron microscopy was instrumental in discovering the cytoskeletal architecture around the 1960s, which allowed obtaining structural information at a high-resolution level. However, the sample preparation procedure often limits this ability in biological samples. Several protocols have been developed over the years to optimize sample preparation. In one of the protocols known as rotary...
6.3K
Actin Polymerization and Cell Motility01:13

Actin Polymerization and Cell Motility

5.3K
Actin is a family of globular proteins that are highly abundant in eukaryotic cells. It makes up approximately 1-5% of total cell protein concentration. Actin monomers polymerize to form a complex network of polarized filaments, the actin cytoskeleton, that plays a crucial role in many cellular processes, including cell motility, division, endocytosis, and metastasis of cancer cells.
Actin cytoskeleton dynamics can produce pushing, pulling, and resistance forces that help the cell to migrate....
5.3K
Polarity of the Cytoskeleton01:18

Polarity of the Cytoskeleton

19.0K
The intrinsic polarity of cells can be primarily attributed to two factors- i) the asymmetric accumulation of mobile components such are regulatory molecules and subcellular components across the cell and ii) the orientation of polar cytoskeletal filaments that make up the cytoskeletal networks, specifically microfilaments, and microtubules arranged along the axis of polarity. Interactions between the cytoskeletal filaments are crucial for the establishment and maintenance of the polar nature...
19.0K
Generation of Straight or Branched Actin Filaments01:14

Generation of Straight or Branched Actin Filaments

3.0K
The straight or branched structure formation of actin filaments is controlled by nucleating proteins such as the formins and Arp2/3 complex. Formin-mediated assembly results in straight filaments, whereas Arp2/3 protein complex-mediated assembly results in branched actin filaments.
Arp2/3 Complex
Arp2/3 complex is a seven-subunit complex consisting of two proteins similar to actin- Arp2 and Arp3, and five other subunits that help keep Arp2 and Arp3 inactive. When required, the complex is...
3.0K
The Role of Actin and Myosin in Non-muscle Cells01:10

The Role of Actin and Myosin in Non-muscle Cells

3.6K
Actin and myosin or actomyosin filaments also play a significant role in cells other than those involved in muscle contraction (which occurs within the sarcomere of muscle cells). The mechanism of non-muscle cell contractile bundles was first observed in Dictyostelium and Acanthamoeba. In non-muscle cells, two bundles are commonly found: stress fibers and actomyosin adherence belts. These contractile bundles are smaller and less organized than the ones found in muscle cells. They  are held...
3.6K

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Related Experiment Video

Updated: Aug 2, 2025

Aip1p Dynamics Are Altered by the R256H Mutation in Actin
08:57

Aip1p Dynamics Are Altered by the R256H Mutation in Actin

Published on: July 30, 2014

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Data driven and cell specific determination of nuclei-associated actin structure.

Nina Nikitina1, Nurbanu Bursa2,3, Matthew Goelzer4

  • 1Boise State University.

Biorxiv : the Preprint Server for Biology
|April 17, 2023
PubMed
Summary

Researchers developed a new machine learning method to accurately measure filamentous actin (F-actin) fibers. This tool quantifies F-actin organization and its impact on nuclear shape in mesenchymal stem cells (MSCs).

Keywords:
F-actinLINCcytoskeletonmachine learningmechanobiologynuclear envelope

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Analyzing the &#945;-Actinin Network in Human iPSC-Derived Cardiomyocytes Using Single Molecule Localization Microscopy
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Exploiting Live Imaging to Track Nuclei During Myoblast Differentiation and Fusion
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Area of Science:

  • Cell Biology
  • Biophysics
  • Computational Biology

Background:

  • Accurate quantification of filamentous actin (F-actin) is crucial for understanding its role in cellular mechanics but is hindered by its complex, interconnected structure.
  • Existing methods for F-actin measurement often rely on subjective or poorly reproducible techniques, limiting detailed analysis.

Approach:

  • Introduced a novel machine learning methodology using Convolutional Neural Networks (CNNs) for segmenting and reconstructing nuclei-associated F-actin from 3D confocal microscopy images.
  • Developed a pipeline to connect intersecting contours on cross-sectional slices, enabling precise measurement of individual actin filament parameters (number, length, volume).

Key Points:

  • Quantified F-actin organization and nuclear shape in mesenchymal stem cells (MSCs) after disrupting Linker of Nucleoskeleton and Cytoskeleton (LINC) Complexes.
  • Demonstrated that LINC complex disruption leads to F-actin disorganization, characterized by reduced fiber length and volume, and altered nuclear morphology.
  • Validated the reproducibility of the novel quantification method for F-actin.

Conclusions:

  • Presents a robust, reproducible machine learning tool for quantitative F-actin analysis in mechanobiology.
  • Provides a novel pipeline for generating realistic computational models based on quantitative F-actin data.
  • Highlights the critical role of F-actin in nucleocytoskeletal connectivity and nuclear architecture.