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Updated: Aug 1, 2025

Determining the Likelihood of Variant Pathogenicity Using Amino Acid-level Signal-to-Noise Analysis of Genetic Variation
Published on: January 16, 2019
Long QTc in hypertrophic cardiomyopathy: A consequence of structural myocardial damage or a distinct genetic disease?
Francesco Cava1, Caterina Micolonghi2,3, Maria Beatrice Musumeci1
1Department of Clinical and Molecular Medicine, Sapienza University, Rome, Italy.
Insights
Genetic testing in hypertrophic cardiomyopathy (HCM) patients with unexplained QTc prolongation revealed a minor role for Long QT Syndrome (LQTS) genes. This suggests further molecular investigation may aid risk stratification in HCM.
Area of Science:
- Cardiovascular Genetics
- Molecular Cardiology
- Electrophysiology
Background:
- Hypertrophic cardiomyopathy (HCM) is an inherited condition causing left ventricular hypertrophy.
- QTc prolongation, a marker of arrhythmia risk, affects 13% of HCM patients.
- While structural changes explain some QTc prolongation, underlying genetic factors may exist.
Purpose of the Study:
- To investigate the potential co-inheritance of Long QT Syndrome (LQTS) genes in HCM patients with unexplained QTc prolongation.
- To explore a distinct genetic basis for QTc prolongation in hypertrophic cardiomyopathy.
Main Methods:
- Next-generation sequencing (NGS) using the Illumina TrueSight Cardio panel.
- Analysis of 25 HCM patients with unexplained QTc prolongation (males >450ms, females >470ms).
- Patients were selected from a cohort of 150 HCM patients with sarcomere gene variants.
Main Results:
- Pathogenic variants in the KCNQ1 gene (LQTS-associated) were identified in 8% of patients.
- Variants of uncertain significance in SCN5A, KCNJ5, AKAP9, and ANK2 were found in 16% of patients.
- LQTS genes showed a minor contribution to QTc prolongation in this HCM cohort.
Conclusions:
- LQTS gene mutations play a limited role in QTc prolongation in HCM patients.
- Screening for ion channel gene mutations may benefit HCM patients with unexplained prolonged QTc.
- Molecular diagnosis can improve risk stratification and treatment planning for HCM.
Abstract:
Hypertrophic cardiomyopathy (HCM) is an autosomal dominant disease, characterized by the presence of unexplained left ventricular hypertrophy. This condition is often associated with electrocardiographic abnormalities including QTc prolongation occurring in 13% of patients. The main explanation for prolonged QTc in HCM is myocardial hypertrophy and the related structural damage. However, other mechanisms, including long QT syndrome (LQTS) genes mutations, may be involved. In the present study we explored the hypothesis of a distinct genetic basis underlying QTc prolongation in HCM by investigating the potential co-inheritance of pathogenic gene variants associated with LQTS and HCM. For this purpose, starting from a cohort of 150 HCM patients carrying pathogenic variants in sarcomere genes, we selected 25 patients carrying a QTc prolongation unexplained by any other cause. The QTc was considered prolonged if greater than 450 ms in males and greater than 470 ms in females. The NGS analysis was performed with Illumina TrueSight Cardio panel genes on Illumina MiniSeq platform. We identified pathogenic/likely pathogenic variants in the KCNQ1 in two patients (c.1781G > A, p. Arg594Gln; c.532G > A, p. Ala178Thr) (8%). Variants of uncertain significance were identified in SCN5A, KCNJ5, AKAP9 and ANK2 in four patients (16%). Although the results are limited by the small number of patients included in the study, they highlight a minor contribution of LQTS genes for QTc prolongation in HCM patients. The screening for ion channel genes mutations may be considered in HCM patients with prolonged QTc unexplained by any other cause. This in-depth molecular diagnosis may contribute to improve risk stratification and treatment planning.
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