Estimating mussel mound distribution and geometric properties in coastal salt marshes by using UAV-Lidar point clouds

The Atlantic ribbed mussel (Geukensia demissa) is common in southeastern US salt marshes, where they form dense aggregations (mounds), that occur in the highest densities and sizes on the marsh platform close to the tidal creeks' heads. Within these marshes, mussels help build marsh elevation via their biodeposition of organic and inorganic material, stimulate the growth of the dominant foundation species cordgrass (Spartina alterniflora), and create hotspots of invertebrate biodiversity, nutrient cycling, and drought resilience. Given their powerful role, there is rising interest in assessing natural variation in the distribution of mussel mounds and using such information to guide marsh conservation and restoration strategies. However, gathering such information is challenging, because the small dimension (∼1 m) of the mounds and the presence of overlying vegetation make it difficult to quantify mound distribution on the marsh. Therefore, this study presents a new procedure to compute the distribution, height, radius, volume, and distance of mounds in marsh environments using remote sensing. A high-resolution UAV-Lidar point cloud has been collected over a highly vegetated salt marsh in Georgia, USA, using a custom-built laser scanner system. An original detection algorithm, based on a Random Forest classifier, has been implemented to identify the mounds from the point cloud. The algorithm has been trained and tested on surveyed mounds and provides their location and geometric properties. Results indicate that the classifier can distinguish mussel mounds from non-mussel mound locations with an accuracy of 95 %. The classifier identified ∼8000 mounds, which occupy 10 % of the study domain, and a volume (shells+feces/pseudofeces) of 680 m³. The method is highly useful in efforts to monitor mussel mounds over time and scale up to assess mounds across sites, providing invaluable data for future studies related to the geomorphic evolution of marshes to sea level rise and siting marsh conservation and enhancement projects.