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Metastatic Prostate Cancers with BRCA2 versus ATM Mutations Exhibit Divergent Molecular Features and Clinical
Justin Hwang1,2, Xiaolei Shi2, Andrew Elliott3
1Masonic Cancer Center, University of Minnesota-Twin Cities, Minneapolis, Minnesota.
Purpose:
In patients with metastatic prostate cancer (mPC), ATM and BRCA2 mutations dictate differences in PARPi inhibitor response and other therapies. We interrogated the molecular features of ATM- and BRCA2-mutated mPC to explain the divergent clinical outcomes and inform future treatment decisions.
Experimental Design:
We examined a novel set of 1,187 mPCs after excluding microsatellite-instable (MSI) tumors. We stratified these based on ATM (n = 88) or BRCA2 (n = 98) mutations. As control groups, mPCs with mutations in 12 other homologous recombination repair (HRR) genes were considered non-BRCA2/ATM HRR-deficient (HRDother, n = 193), whereas lack of any HRR mutations were considered HRR-proficient (HRP; n = 808). Gene expression analyses were performed using Limma. Real-world overall survival was determined from insurance claims data.
Results:
In noncastrate mPCs, only BRCA2-mutated mPCs exhibited worse clinical outcomes to AR-targeted therapies. In castrate mPCs, both ATM and BRCA2 mutations exhibited worse clinical outcomes to AR-targeted therapies. ATM-mutated mPCs had reduced TP53 mutations and harbored coamplification of 11q13 genes, including CCND1 and genes in the FGF family. BRCA2-mutated tumors showed elevated genomic loss-of-heterozygosity scores and were often tumor mutational burden high. BRCA2-mutated mPCs had upregulation of cell-cycle genes and were enriched in cell-cycle signaling programs. This was distinct from ATM-mutated tumors.
Conclusions:
Tumoral ATM and BRCA2 mutations are associated with differential clinical outcomes when patients are stratified by treatments, including hormonal or taxane therapies. ATM- and BRCA2-mutated tumors exhibited differences in co-occurring molecular features. These unique molecular features may inform therapeutic decisions and development of novel therapies.
Insights
ATM and BRCA2 mutations in metastatic prostate cancer (mPC) impact treatment response. Understanding their distinct molecular features is key for personalized therapy and improved clinical outcomes in mPC patients.
Area of Science:
- Oncology
- Genetics
- Molecular Biology
Background:
- Metastatic prostate cancer (mPC) patient outcomes vary based on genetic mutations.
- ATM and BRCA2 mutations influence response to therapies like PARPi inhibitors.
Purpose of the Study:
- To investigate the molecular differences between ATM- and BRCA2-mutated mPC.
- To correlate these molecular features with clinical outcomes and guide future treatment strategies.
Main Methods:
- Analysis of 1,187 mPC tumors, stratified by ATM, BRCA2, other HRR gene mutations, or HRR-proficient status.
- Gene expression profiling using Limma and real-world overall survival analysis from insurance claims data.
Main Results:
- BRCA2-mutated mPC showed worse outcomes with AR-targeted therapies in noncastrate settings; both ATM and BRCA2 mutations correlated with worse outcomes in castrate settings.
- ATM-mutated mPC featured reduced TP53 mutations and CCND1/FGF coamplification.
- BRCA2-mutated mPC exhibited higher genomic loss-of-heterozygosity, increased tumor mutational burden, and enriched cell-cycle signaling pathways.
Conclusions:
- ATM and BRCA2 mutations in mPC are linked to distinct molecular profiles and differential clinical outcomes.
- These unique molecular characteristics can inform therapeutic decisions and the development of novel treatments for mPC.
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