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Updated: Jul 31, 2025

Oncogenic Gene Fusion Detection Using Anchored Multiplex Polymerase Chain Reaction Followed by Next Generation Sequencing
Published on: July 5, 2019
Biological and clinical implications of FGFR aberrations in paediatric and young adult cancers
Lauren M Brown1,2, Paul G Ekert3,4,5,6, Emmy D G Fleuren1,2,7
1Children's Cancer Institute, Lowy Cancer Research Centre, UNSW Sydney, Sydney, NSW, Australia.
Abstract:
Rare but recurrent mutations in the fibroblast growth factor receptor (FGFR) pathways, most commonly in one of the four FGFR receptor tyrosine kinase genes, can potentially be targeted with broad-spectrum multi-kinase or FGFR selective inhibitors. The complete spectrum of these mutations in paediatric cancers is emerging as precision medicine programs perform comprehensive sequencing of individual tumours. Identification of patients most likely to benefit from FGFR inhibition currently rests on identifying activating FGFR mutations, gene fusions, or gene amplification events. However, the expanding use of transcriptome sequencing (RNAseq) has identified that many tumours overexpress FGFRs, in the absence of any genomic aberration. The challenge now presented is to determine when this indicates true FGFR oncogenic activity. Under-appreciated mechanisms of FGFR pathway activation, including alternate FGFR transcript expression and concomitant FGFR and FGF ligand expression, may mark those tumours where FGFR overexpression is indicative of a dependence on FGFR signalling. In this review, we provide a comprehensive and mechanistic overview of FGFR pathway aberrations and their functional consequences in paediatric cancer. We explore how FGFR over expression might be associated with true receptor activation. Further, we discuss the therapeutic implications of these aberrations in the paediatric setting and outline current and emerging therapeutic strategies to treat paediatric patients with FGFR-driven cancers.
Insights
Fibroblast growth factor receptor (FGFR) pathway aberrations drive paediatric cancers. Understanding FGFR overexpression and activation mechanisms is key for targeted therapies in precision medicine.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- Fibroblast growth factor receptor (FGFR) pathway mutations are implicated in various cancers.
- Precision medicine increasingly utilizes comprehensive genomic sequencing for targeted therapies.
- Transcriptome sequencing (RNAseq) reveals FGFR overexpression in tumors lacking genomic aberrations.
Purpose of the Study:
- To review FGFR pathway aberrations in paediatric cancers.
- To explore mechanisms of FGFR pathway activation, including overexpression.
- To discuss therapeutic strategies for FGFR-driven paediatric cancers.
Main Methods:
- Comprehensive review of existing literature on FGFR aberrations in paediatric cancers.
- Analysis of mechanisms leading to FGFR pathway activation.
- Evaluation of therapeutic implications and strategies.
Main Results:
- Recurrent mutations, fusions, and amplifications in FGFR genes are targetable.
- FGFR overexpression, even without genomic aberrations, may indicate oncogenic activity.
- Alternate transcript expression and ligand co-expression are potential activation mechanisms.
Conclusions:
- FGFR pathway aberrations are significant drivers in paediatric cancers.
- Identifying true FGFR oncogenic activity from overexpression is crucial for treatment.
- Targeted therapies offer promise for paediatric patients with FGFR-driven malignancies.
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