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KMT2D Deficiency Promotes Myeloid Leukemias which Is Vulnerable to Ribosome Biogenesis Inhibition
Jing Xu1, Ailing Zhong1, Shan Zhang1
1Department of Hematology, Institute of Hematology, State Key Laboratory of Biotherapy and Cancer Center, West China Hospital, Sichuan University, Chengdu, 610041, China.
Abstract:
KMT2C and KMT2D are the most frequently mutated epigenetic genes in human cancers. While KMT2C is identified as a tumor suppressor in acute myeloid leukemia (AML), the role of KMT2D remains unclear in this disease, though its loss promotes B cell lymphoma and various solid cancers. Here, it is reported that KMT2D is downregulated or mutated in AML and its deficiency, through shRNA knockdown or CRISPR/Cas9 editing, accelerates leukemogenesis in mice. Hematopoietic stem and progenitor cells and AML cells with Kmt2d loss have significantly enhanced ribosome biogenesis and consistently, enlarged nucleolus, increased rRNA and protein synthesis rates. Mechanistically, it is found that KMT2D deficiency leads to the activation of the mTOR pathway in both mouse and human AML cells. Kmt2d directly regulates the expression of Ddit4, a negative regulator of the mTOR pathway. Consistent with the abnormal ribosome biogenesis, it is shown that CX-5461, an inhibitor of RNA polymerase I, significantly restrains the growth of AML with Kmt2d loss in vivo and extends the survival of leukemic mice. These studies validate KMT2D as a de facto tumor suppressor in AML and reveal an unprecedented vulnerability to ribosome biogenesis inhibition.
Insights
Loss of the KMT2D gene accelerates acute myeloid leukemia (AML) in mice by enhancing ribosome production. Inhibiting ribosome biogenesis shows promise for treating KMT2D-deficient AML.
Area of Science:
- Oncology
- Epigenetics
- Molecular Biology
Background:
- KMT2C and KMT2D are frequently mutated epigenetic regulators in cancer.
- KMT2C acts as a tumor suppressor in acute myeloid leukemia (AML).
- The role of KMT2D in AML is currently unclear, though its loss is linked to other cancers.
Purpose of the Study:
- To investigate the role of KMT2D in acute myeloid leukemia (AML).
- To explore the molecular mechanisms underlying KMT2D's function in AML.
- To identify potential therapeutic strategies for KMT2D-deficient AML.
Main Methods:
- Gene knockdown using shRNA and gene editing with CRISPR/Cas9 in mouse models.
- Analysis of ribosome biogenesis, nucleolus size, and protein synthesis rates.
- Investigation of the mTOR pathway and its regulators, including DDIT4.
- In vivo studies using the RNA polymerase I inhibitor CX-5461.
Main Results:
- KMT2D is downregulated or mutated in AML, and its deficiency accelerates leukemogenesis in mice.
- KMT2D loss enhances ribosome biogenesis, nucleolus size, and protein synthesis in hematopoietic stem/progenitor cells and AML cells.
- KMT2D deficiency activates the mTOR pathway by directly regulating DDIT4 expression.
- Inhibition of RNA polymerase I with CX-5461 effectively restrains AML growth with Kmt2d loss in vivo.
Conclusions:
- KMT2D functions as a tumor suppressor in acute myeloid leukemia (AML).
- KMT2D-deficient AML exhibits a vulnerability to ribosome biogenesis inhibition.
- Targeting ribosome biogenesis presents a potential therapeutic avenue for AML with KMT2D loss.
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