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Updated: Jul 31, 2025

A Streamlined Approach for Mass Spectrometry-Based Proteomics Using Selected Tissue Regions
Published on: April 18, 2025
Tissue proteome analysis for profiling proteins associated with lymph node metastasis in gallbladder cancer
Vaishali Jain1,2, Javed Akhtar1,3, Ratna Priya1,3
1ICMR-National Institute of Pathology, Safdarjung Hospital Campus, New Delhi, 110029, India.
Lymph node metastasis in gallbladder cancer (GBC) significantly worsens patient survival. This study identified key proteins like KRT7 and SRI overexpressed in lymph node-positive GBC, offering potential diagnostic and therapeutic targets.
Area of Science:
- Oncology
- Proteomics
- Molecular Biology
Background:
- Lymph node (LN) metastasis is a critical prognostic factor in gallbladder cancer (GBC), correlating with significantly reduced survival rates.
- Despite standard treatments, LN-positive GBC patients exhibit a median survival of 7 months compared to ~23 months for LN-negative patients.
Purpose of the Study:
- To elucidate the molecular mechanisms underlying lymph node metastasis in gallbladder cancer.
- To identify specific protein biomarkers associated with LN metastasis in GBC.
Main Methods:
- iTRAQ-based quantitative proteomic analysis was performed on primary tumor tissues from LN-negative GBC, LN-positive GBC, and non-tumor controls.
- Bioinformatic analysis using the STRING database was employed to identify deregulated pathways.
- Western blot and immunohistochemistry (IHC) were used to validate protein expression levels.
Main Results:
- 58 differentially expressed proteins (DEPs) were identified in LN-positive GBC compared to LN-negative GBC and controls.
- Key proteins associated with LN metastasis include cytoskeletal proteins (KRT7, KRT19, VIM, SRI) and nuclear proteins (NPM1, HNRNPA2B1).
- Overexpression of KRT7 and SRI was confirmed in LN-positive GBC tissues via Western blot and IHC.
Conclusions:
- Proteomic analysis reveals distinct molecular signatures associated with lymph node metastasis in gallbladder cancer.
- Proteins such as KRT7 and SRI show significant overexpression in LN-positive GBC and warrant further investigation for diagnostic and therapeutic potential.
- Deregulated pathways including 'neutrophil degranulation' and 'HIF1 activation' may play roles in GBC lymph node metastasis.
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