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Published on: September 1, 2018
The ecological consequences and evolution of retron-mediated suicide as a way to protect Escherichia coli from being
Brandon A Berryhill1,2, Joshua A Manuel1, Rodrigo Garcia1
1Department of Biology, Emory University, Atlanta, Georgia, United States of America.
Abstract:
Retrons were described in 1984 as DNA sequences that code for a reverse transcriptase and a unique single-stranded DNA/RNA hybrid called multicopy single-stranded DNA (msDNA). It would not be until 2020 that a function was shown for retrons, when compelling evidence was presented that retrons activate an abortive infection pathway in response to bacteriophage (phage) infection. When infected with the virulent mutant of the phage lambda, λVIR, and to a lesser extent, other phages, a retron designated Ec48 is activated, the Escherichia coli bearing this retron element dies, and the infecting phage is lost. With the aid of a mathematical model, we explore the a priori conditions under which retrons will protect bacterial populations from predation by phage and the conditions under which retron-bearing bacteria will evolve in populations without this element. Using isogenic E. coli with and without Ec48 and λVIR, we estimated the parameters of our model and tested the hypotheses generated from our analysis of its properties. Our models and experiments demonstrate that cells expressing a retron-mediated abortive infection system can protect bacterial populations. Our results demonstrate that retron bearing bacteria only have a competitive advantage under a limited set of conditions.
Insights
Retrons, DNA sequences with a reverse transcriptase, activate an abortive infection system to protect bacterial populations from bacteriophage (phage) predation. However, retron-bearing bacteria only offer a competitive advantage under specific conditions.
Area of Science:
- Molecular Biology
- Genetics
- Evolutionary Biology
Background:
- Retrons are DNA sequences encoding reverse transcriptase and multicopy single-stranded DNA (msDNA).
- Recent research (2020) revealed retrons activate an abortive infection pathway against bacteriophage (phage) infection.
Purpose of the Study:
- To explore conditions protecting bacterial populations from phage predation using retrons.
- To investigate the evolution of retron-bearing bacteria in populations lacking this element.
Main Methods:
- Mathematical modeling to analyze retron-mediated protection and evolution.
- Experimental validation using isogenic Escherichia coli strains with and without the Ec48 retron and λVIR phage.
Main Results:
- Retron-mediated abortive infection systems can protect bacterial populations from phage.
- Retron-bearing bacteria exhibit a competitive advantage only under limited conditions.
Conclusions:
- Retrons provide a defense mechanism against phage, but their ecological advantage is context-dependent.
- Understanding retron function is crucial for microbial defense strategies.
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