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Validating a novel deterministic privacy-preserving record linkage between administrative & clinical data:
Alisia Southwell1, Susan Bronskill2,3,4, Tom Gee5
1Department of Medicine (Neurology), Sunnybrook Health Sciences Centre, TorontoToronto, M4N 3M5.
International Journal of Population Data Science
|May 8, 2023
Summary
Privacy-preserving record linkage using homomorphic encryption successfully matched over 99% of records. This method is feasible and valid for combining sensitive health data, enhancing data quality and security.
Area of Science:
- Health Informatics
- Data Security
- Biostatistics
Background:
- Combining research and administrative data offers unique insights but is hindered by data encryption.
- Traditional record linkage methods fail with encrypted personal health data due to privacy and institutional restrictions.
- Privacy-preserving record linkage is essential for secure data integration.
Purpose of the Study:
- To assess the feasibility and validity of a deterministic privacy-preserving data linkage protocol.
- To evaluate a protocol using homomorphically encrypted data for secure record linkage.
Main Methods:
- A deterministic privacy-preserving data linkage protocol was implemented using homomorphically encrypted direct identifiers (health card number).
- Feasibility was determined by direct identifier match rates, and validity by indirect identifier match rates (sex, date of birth).
- Encrypted data was linked on a third-party server without decrypting individual records, followed by verification using indirect identifiers.
Main Results:
- The linkage successfully matched 99.9% of records using direct identifiers and 99.8% using indirect identifiers.
- The protocol demonstrated high feasibility and validity, exceeding the 95% threshold.
- Linking 8,128 individuals to over 3.2 million records took 36 days.
Conclusions:
- The privacy-preserving data linkage protocol is both feasible and valid for integrating encrypted health datasets.
- This approach ensures patient data privacy and security while improving data quality.
- While resource-intensive initially, increased automation makes the process sustainable.

