cFOS expression in the prefrontal cortex correlates with altered cerebral metabolism in developing germ-free mice
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Updated: Jul 31, 2025

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Trinity Pate1, Daniel C Anthony1, Daniel E Radford-Smith1
1Department of Pharmacology, University of Oxford, Oxford, United Kingdom.
Introduction:
The microbiota plays a critical role in modulating various aspects of host physiology, particularly through the microbiota-gut-brain (MGB) axis. However, the mechanisms that transduce and affect gut-to-brain communication are still not well understood. Recent studies have demonstrated that dysbiosis of the microbiome is associated with anxiety and depressive symptoms, which are common complications of metabolic syndrome. Germ-free (GF) animal models offer a valuable tool for studying the causal effects of microbiota on the host.
Methods:
We employed gene expression and nuclear magnetic resonance (NMR)-based metabolomic techniques to investigate the relationships between brain plasticity and immune gene expression, peripheral immunity, and cerebral and liver metabolism in GF and specific pathogen-free (SPF) mice.
Results:
Our principal findings revealed that brain acetate (p = 0.012) was significantly reduced in GF relative to SPF mice, whereas glutamate (p = 0.0013), glutamine (p = 0.0006), and N-acetyl aspartate (p = 0.0046) metabolites were increased. Notably, cFOS mRNA expression, which was significantly decreased in the prefrontal cortex of GF mice relative to SPF mice (p = 0.044), correlated with the abundance of a number of key brain metabolites altered by the GF phenotype, including glutamate and glutamine.
Discussion:
These results highlight the connection between the GF phenotype, altered brain metabolism, and immediate-early gene expression. The study provides insight into potential mechanisms by which microbiota can regulate neurotransmission through modulation of the host's brain and liver metabolome, which may have implications for stress-related psychiatric disorders such as anxiety.
Insights
Germ-free mice show altered brain metabolism and reduced immediate-early gene expression, suggesting a link between the gut microbiome and brain function. This impacts neurotransmission and may influence anxiety disorders.
Area of Science:
- Neuroscience
- Microbiology
- Metabolomics
Background:
- The microbiota-gut-brain (MGB) axis influences host physiology, but mechanisms of gut-to-brain communication are unclear.
- Microbiome dysbiosis is linked to anxiety and depression, common in metabolic syndrome.
- Germ-free (GF) animal models are crucial for studying microbiota's causal effects.
Purpose of the Study:
- To investigate the relationship between brain plasticity, gene expression, immunity, and metabolism in GF and specific pathogen-free (SPF) mice.
- To elucidate how the absence of microbiota affects brain and liver metabolism.
- To explore the link between GF phenotype, brain metabolism, and immediate-early gene expression.
Main Methods:
- Gene expression analysis.
- Nuclear magnetic resonance (NMR)-based metabolomics.
- Comparison of GF and SPF mouse models.
Main Results:
- GF mice exhibited reduced brain acetate levels.
- GF mice showed increased levels of glutamate, glutamine, and N-acetyl aspartate in the brain.
- Decreased cFOS mRNA expression in the prefrontal cortex of GF mice correlated with altered brain metabolites.
Conclusions:
- The GF phenotype is associated with altered brain metabolism and immediate-early gene expression.
- Microbiota may regulate neurotransmission via modulation of brain and liver metabolomes.
- Findings suggest potential mechanisms relevant to stress-related psychiatric disorders like anxiety.
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