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Updated: Jul 31, 2025

Immunofluorescence Analysis of Endogenous and Exogenous Centromere-kinetochore Proteins
Published on: March 3, 2016
ATR protects centromere identity by promoting DAXX association with PML nuclear bodies
Isabelle Trier1, Elizabeth M Black1, Yoon Ki Joo1
1Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06511, USA; Yale Cancer Biology Institute, Yale University, West Haven, CT 06516, USA.
Abstract:
Centromere protein A (CENP-A) defines centromere identity and nucleates kinetochore formation for mitotic chromosome segregation. Here, we show that ataxia telangiectasia and Rad3-related (ATR) kinase, a master regulator of the DNA damage response, protects CENP-A occupancy at interphase centromeres in a DNA damage-independent manner. In unperturbed cells, ATR localizes to promyelocytic leukemia nuclear bodies (PML NBs), which house the histone H3.3 chaperone DAXX (death domain-associated protein 6). We find that ATR inhibition reduces DAXX association with PML NBs, resulting in the DAXX-dependent loss of CENP-A and an aberrant increase in H3.3 at interphase centromeres. Additionally, we show that ATR-dependent phosphorylation within the C terminus of DAXX regulates CENP-A occupancy at centromeres and DAXX localization. Lastly, we demonstrate that acute ATR inhibition during interphase leads to kinetochore formation defects and an increased rate of lagging chromosomes. These findings highlight a mechanism by which ATR protects centromere identity and genome stability.
Insights
The ataxia telangiectasia and Rad3-related (ATR) kinase protects centromere protein A (CENP-A) at centromeres, independent of DNA damage. ATR inhibition causes CENP-A loss, leading to chromosome segregation errors.
Area of Science:
- Cell Biology
- Molecular Biology
- Genetics
Background:
- Centromere protein A (CENP-A) is crucial for centromere identity and kinetochore assembly, ensuring accurate chromosome segregation.
- The ataxia telangiectasia and Rad3-related (ATR) kinase is a key regulator of the DNA damage response.
- Promyelocytic leukemia nuclear bodies (PML NBs) are nuclear structures involved in various cellular processes and house specific protein chaperones.
Purpose of the Study:
- To investigate the role of ATR kinase in maintaining CENP-A occupancy at interphase centromeres.
- To elucidate the mechanism by which ATR influences CENP-A localization and centromere identity.
- To determine the consequences of ATR inhibition on centromere function and genome stability.
Main Methods:
- Immunofluorescence microscopy to visualize ATR, DAXX, and CENP-A localization.
- Biochemical assays to assess protein-protein interactions and phosphorylation.
- Cell-based assays to evaluate kinetochore formation and chromosome segregation fidelity.
Main Results:
- ATR kinase localizes to PML NBs in unperturbed cells, associating with the histone chaperone DAXX.
- ATR inhibition disrupts DAXX association with PML NBs, leading to DAXX-dependent CENP-A loss and increased H3.3 at centromeres.
- ATR-dependent phosphorylation of DAXX is critical for CENP-A maintenance and DAXX localization.
- Acute ATR inhibition causes kinetochore defects and increased lagging chromosomes during mitosis.
Conclusions:
- ATR kinase plays a critical, DNA damage-independent role in safeguarding CENP-A occupancy at interphase centromeres.
- ATR signaling pathway, through DAXX, is essential for maintaining centromere identity and preventing genome instability.
- These findings reveal a novel mechanism linking ATR kinase activity to centromere function and overall genomic integrity.
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