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Integration of Radiomics and Tumor Biomarkers in Interpretable Machine Learning Models.

Lennart Brocki1, Neo Christopher Chung1

  • 1Institute of Informatics, University of Warsaw, Banacha 2, 02-097 Warsaw, Poland.

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|May 13, 2023
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Summary

This study introduces ConRad, an interpretable deep learning model for lung cancer diagnosis using CT scans. ConRad integrates radiomics and predicted biomarkers, outperforming black-box models for improved clinical decision-making.

Keywords:
artificial intelligenceconcept bottleneckdeep learningexplainabilityfeature engineeringfeature selectioninterpretabilityradiomicstumor biomarkers

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Area of Science:

  • Oncology
  • Radiology
  • Machine Learning

Background:

  • Deep neural networks (DNNs) show promise in medical imaging but lack interpretability, hindering clinical adoption for cancer diagnosis.
  • Interpretability is crucial for clinicians to trust and utilize AI-driven diagnostic tools in oncology.

Purpose of the Study:

  • To develop an interpretable machine learning model, ConRad, for lung cancer classification using CT scans.
  • To integrate expert-derived radiomics and DNN-predicted biomarkers into a transparent classifier.

Main Methods:

  • Proposed ConRad, combining concept bottleneck model (CBM)-predicted biomarkers and radiomics features in interpretable classifiers.
  • Evaluated ConRad against black-box convolutional neural networks (CNNs) using segmented CT scans.
  • Assessed combinations of radiomics, predicted biomarkers, and CNN features across five classifiers, utilizing Lasso for feature selection.

Main Results:

  • ConRad models, particularly nonlinear SVM and logistic regression with Lasso, demonstrated superior performance in five-fold cross-validation.
  • Interpretability was a key advantage of ConRad over traditional CNNs.
  • Lasso feature selection reduced model complexity and improved accuracy.

Conclusions:

  • The ConRad model effectively combines CBM-derived biomarkers and radiomics for interpretable lung nodule malignancy classification.
  • ConRad offers a promising, transparent alternative to black-box models in oncological imaging analysis.
  • The approach enhances clinical trust and utility of AI in cancer diagnosis.