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Isolation and Cultivation of Neural Progenitors Followed by Chromatin-Immunoprecipitation of Histone 3 Lysine 79 Dimethylation Mark
Published on: January 26, 2018
An acetylation-mediated chromatin switch governs H3K4 methylation read-write capability.
Kanishk Jain1,2, Matthew R Marunde3, Jonathan M Burg3
1Department of Biochemistry and Biophysics, University of North Carolina at Chapel Hill of Medicine, Chapel Hill, United States.
Histone acetylation acts as a chromatin switch, increasing nucleosome accessibility for H3K4 methylation readers and writers. This acetylation dynamically couples with H3K4 methylation, explaining their linked levels.
Area of Science:
- Epigenetics
- Molecular Biology
- Chromatin Biology
Background:
- Histone N-terminal tails in nucleosomes dynamically shift between accessible and DNA-bound states.
- Histone tail accessibility influences epigenetic machinery interactions.
- H3 tail acetylation (e.g., K9ac, K14ac, K18ac) is known to enhance H3K4me3 reader engagement.
Purpose of the Study:
- To investigate if H3 tail acetylation broadly impacts H3K4 methylation readers and writers.
- To determine if this acetylation-mediated regulation extends beyond known reader interactions.
- To elucidate the mechanism linking H3 tail acetylation and H3K4 methylation levels.
Main Methods:
- Utilized fully-defined heterotypic nucleosomes to study histone tail regulation.
- Assessed nucleosomal accessibility to H3K4 methyl readers and writers.
- Performed in vivo studies to correlate H3 tail acetylation with H3K4 methylation dynamics.
Main Results:
- H3 tail acetylation enhances nucleosomal accessibility for additional H3K4 methyl readers.
- Acetylation also promotes accessibility for H3K4 methyl writers, including MLL1.
- This regulatory effect is specific to the nucleosome context (cis H3 tail) and not observed on peptides.
- In vivo, H3 tail acetylation is dynamically coupled with cis H3K4 methylation.
Conclusions:
- H3 tail acetylation functions as a 'chromatin switch', modulating nucleosome accessibility.
- This switch controls the engagement of both H3K4 methylation readers and writers.
- The findings resolve the question of why H3K4me3 levels are coupled with H3 acetylation.
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