Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Ligand Binding Sites02:40

Ligand Binding Sites

13.0K
Proteins are dynamic macromolecules that carry out a wide variety of essential processes; however, the activities of most proteins depend on their interactions with other molecules or ions, known as ligands.
Protein-ligand interactions are quite specific; even though numerous potential ligands surround a cellular protein at any given time, only a particular ligand can bind to that protein. Moreover, a ligand binds only to a dedicated area on the surface of the protein, known as the...
13.0K
EDTA: Chemistry and Properties01:22

EDTA: Chemistry and Properties

2.0K
Polydentate ligands are most widely used in complexometric titrations because they form more stable complexes with the metal ions than mono- or bidentate ligands due to the chelate effect. Examples of polydentate ligands are ethylenediaminetetraacetic acid (EDTA), crown ethers, and cryptands. The most important feature of optimal polydentate ligands is the ability to form 1:1 complexes in a single-step process. Amino carboxylic acid derivatives are frequently used as complexing agents. EDTA is...
2.0K
Amino acids03:42

Amino acids

89.4K
Amino acids are the monomers that comprise proteins. Each amino acid has the same fundamental structure, which consists of a central carbon atom, or the alpha (α) carbon, bonded to an amino group (NH2), a carboxyl group (COOH), and to a hydrogen atom. Every amino acid also has another atom or group of atoms bonded to the central atom known as the R group. There are 20 common amino acids present in proteins, each with a different R group. Variation in the amino acid sequence is responsible...
89.4K
EDTA: Auxiliary Complexing Reagents01:26

EDTA: Auxiliary Complexing Reagents

632
EDTA titrations are usually carried out in highly basic conditions, where the fully deprotonated form of EDTA, Y4−, actively complexes with the free metal ions in the solution. Several metal ions precipitate as hydrous oxide (hydroxides, oxides, or oxyhydroxides) under these conditions, lowering the concentration of free metal ions in the solution. For this reason, auxiliary complexing agents or ligands such as ammonia, tartrate, citrate, or triethanolamine are used in EDTA titrations to...
632
Factors Affecting Protein-Drug Binding: Drug Interactions01:23

Factors Affecting Protein-Drug Binding: Drug Interactions

213
Drug interactions are a critical aspect of pharmacology and can occur when two or more drugs compete for the same binding site. This competition can result in one drug displacing another, altering the effect of the displaced drug. Drug interactions are complex processes that rely heavily on how much of the displacer drug is present and how strongly it can bind to the same sites as the displaced drug.
Displacement interactions can have varying outcomes, ranging from toxicity to virtually...
213
Factors Affecting Protein-Drug Binding: Drug-Related Factors01:18

Factors Affecting Protein-Drug Binding: Drug-Related Factors

149
Drug binding to proteins is a complex phenomenon influenced by various drug-related factors, each playing a significant role in the interaction between drugs and proteins within the body.
One crucial factor in drug-protein binding is the drug's lipophilicity or its affinity for fat. More lipophilic drugs tend to have higher binding extents. For example, highly lipophilic drugs like cloxacillin exhibit substantial protein binding, with as much as 95% of the drug binding to proteins. In...
149

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

First-principles modeling of polysilazane-derived SiCNH ceramics: insights into the organization of the free-carbon phase.

Physical chemistry chemical physics : PCCP·2026
Same author

LB-PaCS-MD Guided Simulations Reveal Transient Stabilization during TCR-pMHC Dissociation.

Journal of chemical information and modeling·2026
Same author

Beyond Passive Substituents: Tosyl-Directed Self-Templation Enables Selective Pillar[4 + 1]arene Formation and Topology Switching.

Journal of the American Chemical Society·2026
Same author

Computational insights into the pH-dependent behavior of Ipilimumab-CTLA-4.

Physical chemistry chemical physics : PCCP·2026
Same author

2-Mercaptophenylboronic acid: a superior alternative to 2-mercaptoethanol for thioester hydrolysis.

Organic & biomolecular chemistry·2026
Same author

Highly Dispersed Pt-Decorated Oxygen-Vacancy-Rich MOF-Derived SnO<sub>2</sub> Nanostructures on MEMS Hot Plate for ppb-Level Hydrogen Detection.

ACS applied materials & interfaces·2026

Related Experiment Video

Updated: Jul 29, 2025

Author Spotlight: A Computational Approach to Decipher Amino Acid Preferences in Multispecific Protein-Protein Interactions
06:50

Author Spotlight: A Computational Approach to Decipher Amino Acid Preferences in Multispecific Protein-Protein Interactions

Published on: January 26, 2024

1.9K

Enantioselective amino acid interactions in solution.

Natsuki Watanabe1, Mitsuo Shoji2,3, Koichi Miyagawa2

  • 1Graduate School of Pure and Applied Sciences, University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki 305-8571, Japan.

Physical Chemistry Chemical Physics : PCCP
|May 22, 2023
PubMed
Summary

This study uses computer simulations to understand why certain amino acids found in meteorites show a preference for one mirror-image form over the other. By looking at how pairs of molecules interact in liquid, researchers discovered that isovaline shows a stronger preference for specific pairings compared to alanine. This difference helps explain how small initial imbalances in molecular shapes might grow into larger excesses over time.

Keywords:
homochiralityisovalinemolecular modelingmeteoritic chemistry

Frequently Asked Questions

More Related Videos

Solubility of Hydrophobic Compounds in Aqueous Solution Using Combinations of Self-assembling Peptide and Amino Acid
05:08

Solubility of Hydrophobic Compounds in Aqueous Solution Using Combinations of Self-assembling Peptide and Amino Acid

Published on: September 20, 2017

16.9K
The Importance of Correct Protein Concentration for Kinetics and Affinity Determination in Structure-function Analysis
19:16

The Importance of Correct Protein Concentration for Kinetics and Affinity Determination in Structure-function Analysis

Published on: March 17, 2010

20.7K

Related Experiment Videos

Last Updated: Jul 29, 2025

Author Spotlight: A Computational Approach to Decipher Amino Acid Preferences in Multispecific Protein-Protein Interactions
06:50

Author Spotlight: A Computational Approach to Decipher Amino Acid Preferences in Multispecific Protein-Protein Interactions

Published on: January 26, 2024

1.9K
Solubility of Hydrophobic Compounds in Aqueous Solution Using Combinations of Self-assembling Peptide and Amino Acid
05:08

Solubility of Hydrophobic Compounds in Aqueous Solution Using Combinations of Self-assembling Peptide and Amino Acid

Published on: September 20, 2017

16.9K
The Importance of Correct Protein Concentration for Kinetics and Affinity Determination in Structure-function Analysis
19:16

The Importance of Correct Protein Concentration for Kinetics and Affinity Determination in Structure-function Analysis

Published on: March 17, 2010

20.7K

Area of Science:

  • Astrochemistry and enantioselective amino acid interactions research
  • Computational chemistry and molecular physics

Background:

The origin of homochirality in biological systems remains a significant mystery in chemical evolution. Meteorites frequently contain amino acids that exhibit a distinct preference for one specific enantiomer. Researchers have observed that isovaline often displays an enantiomeric excess exceeding ten percent. That uncertainty drove interest in identifying the physical processes that amplify these small initial imbalances. Prior research has shown that molecular interactions play a role in the early stages of crystal formation. However, the exact mechanisms governing these preferences in liquid environments have remained poorly understood. No prior work had resolved how specific molecular structures influence the stability of these pairings. This study addresses that gap by examining the fundamental forces between these molecules.

Purpose Of The Study:

The aim of this study is to investigate the dimeric molecular interactions of alanine and isovaline in solution. Researchers sought to understand the initial nucleation steps that lead to crystal formation. This work addresses the long-standing question of how enantiomeric excesses arise in meteoritic materials. The team focused on identifying a triggering mechanism responsible for the amplification of small initial chiral values. They hypothesized that the specific molecular structure of amino acids influences their interaction preferences. By examining these interactions at a first-principles level, the authors intended to clarify the origins of homochirality. The study was motivated by the need for a molecular-level explanation for the observed preferences in extraterrestrial samples. This research seeks to bridge the gap between microscopic interactions and macroscopic enantiomeric excesses.

Main Methods:

The investigators employed a computational design to simulate molecular behavior at the quantum level. They focused on the dimeric pairing of alanine and isovaline within a liquid medium. This review approach involved calculating the energetic stability of various chiral configurations. The team utilized first-principles methods to ensure high accuracy in their electronic structure predictions. These simulations allowed for a detailed examination of the forces acting between the molecules. The researchers compared the interaction energies of homochiral and heterochiral dimers for both compounds. This systematic evaluation provided a quantitative basis for assessing chirality-dependent preferences. The entire procedure was conducted to model the initial nucleation steps of crystal growth.

Main Results:

The strongest finding from the literature indicates that isovaline displays a significantly higher chirality-dependent interaction than alanine. These results provide a clear molecular-level explanation for the enantioselectivity observed in meteoritic samples. The computational models reveal that the energy differences between dimer types are more pronounced for isovaline. This suggests that isovaline is more effective at favoring specific chiral pairings during the nucleation process. The data show that the structural properties of the amino acid side chains influence these interactions. These findings support the hypothesis that solution-phase dynamics contribute to the amplification of enantiomeric excesses. The study quantifies these differences to demonstrate how molecular geometry dictates the stability of the dimers. This analysis confirms that the chemical identity of the molecule is a critical factor in determining chiral bias.

Conclusions:

The authors demonstrate that isovaline exhibits a higher degree of chirality-dependent interaction compared to alanine. This finding suggests that specific molecular structures are more prone to enantioselective behavior during nucleation. The data provide a molecular-level explanation for the observed preferences in extraterrestrial samples. These results imply that the chemical nature of the amino acid dictates the potential for amplification. The study highlights how initial dimeric pairings serve as a precursor to larger crystalline structures. Researchers propose that these interactions are a key step in the emergence of chiral bias. The evidence supports the idea that solution-phase dynamics contribute to the observed enantiomeric excesses. This synthesis confirms that molecular geometry is a primary factor in the development of homochirality.

The researchers propose that the dimeric interaction of isovaline is more chirality-dependent than that of alanine. This increased sensitivity to molecular orientation during the initial nucleation phase allows for a greater potential to amplify small enantiomeric imbalances compared to the more symmetric alanine.

The authors utilize first-principles calculations to model the dimeric molecular interactions. This computational approach allows for an accurate assessment of the energetic stability of different pairings in a solution environment, which is necessary to understand the early stages of crystal formation.

A first-principles approach is necessary because it provides an accurate, high-resolution view of the electronic interactions between molecules. This level of detail is required to distinguish the subtle energetic differences between homochiral and heterochiral dimers that simpler models might overlook.

The data consist of simulated dimeric molecular interactions in solution. These computational models serve as a proxy for the early nucleation steps, allowing the researchers to quantify how different amino acid structures influence the stability of chiral pairings.

The researchers measure the chirality-dependent interaction strength of amino acid dimers. They observe that isovaline shows a more pronounced difference in stability between its homochiral and heterochiral forms than alanine, indicating a higher potential for enantioselective crystallization.

The authors claim that their findings provide a clear molecular-level insight into the enantioselectivity of amino acids in solution. They suggest that these dimeric interactions are a viable starting point for understanding how larger enantiomeric excesses emerge in meteoritic environments.