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Updated: Jul 29, 2025

Glycomics-Guided Glycoproteomics Facilitates Comprehensive Profiling of the Glycoproteome in Complex Tumor Microenvironments
Published on: February 7, 2025
Roles of glycosylation at the cancer cell surface: opportunities for large scale glycoproteomics
Tomislav Čaval1, Frederico Alisson-Silva1, Flavio Schwarz1
1InterVenn Biosciences, South San Francisco, California.
Abstract:
Cell surface glycosylation has a variety of functions, and its dysregulation in cancer contributes to impaired signaling, metastasis and the evasion of the immune responses. Recently, a number of glycosyltransferases that lead to altered glycosylation have been linked to reduced anti-tumor immune responses: B3GNT3, which is implicated in PD-L1 glycosylation in triple negative breast cancer, FUT8, through fucosylation of B7H3, and B3GNT2, which confers cancer resistance to T cell cytotoxicity. Given the increased appreciation of the relevance of protein glycosylation, there is a critical need for the development of methods that allow for an unbiased interrogation of cell surface glycosylation status. Here we provide an overview of the broad changes in glycosylation at the surface of cancer cell and describe selected examples of receptors with aberrant glycosylation leading to functional changes, with emphasis on immune checkpoint inhibitors, growth-promoting and growth-arresting receptors. Finally, we posit that the field of glycoproteomics has matured to an extent where large-scale profiling of intact glycopeptides from the cell surface is feasible and is poised for discovery of new actionable targets against cancer.
Insights
Altered cell surface glycosylation in cancer impairs anti-tumor immunity. New glycoproteomic methods can profile these changes, identifying novel therapeutic targets for cancer treatment.
Area of Science:
- Biochemistry
- Immunology
- Oncology
Background:
- Cell surface glycosylation plays crucial roles in cellular functions.
- Dysregulated glycosylation in cancer is linked to impaired signaling, metastasis, and immune evasion.
- Specific glycosyltransferases (B3GNT3, FUT8, B3GNT2) are associated with reduced anti-tumor immune responses.
Purpose of the Study:
- To provide an overview of altered cell surface glycosylation in cancer.
- To highlight examples of receptors with aberrant glycosylation affecting cancer progression and immune response.
- To emphasize the need for unbiased methods to interrogate cell surface glycosylation.
Main Methods:
- Review of literature on cell surface glycosylation changes in cancer.
- Discussion of specific examples of aberrant glycosylation on key receptors.
- Exploration of the potential of glycoproteomics for large-scale profiling.
Main Results:
- Cancer cells exhibit broad changes in surface glycosylation.
- Aberrant glycosylation of immune checkpoint inhibitors, growth-promoting, and growth-arresting receptors impacts cancer.
- Glycosyltransferases like B3GNT3, FUT8, and B3GNT2 are implicated in immune evasion.
Conclusions:
- The field of glycoproteomics is advanced enough for large-scale profiling of cell surface glycopeptides.
- Such profiling can lead to the discovery of new actionable cancer targets.
- Understanding aberrant glycosylation is critical for developing novel cancer immunotherapies.
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