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Modular Oxime Formation by a trans-AT Polyketide Synthase.

Hannah A Minas1, Romain M M François1,2, Franziska Hemmerling1

  • 1Institute of Microbiology, Eidgenössische Technische Hochschule (ETH) Zürich, Vladimir-Prelog-Weg 4, 8093, Zürich, Switzerland.

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Summary

Modular trans-acyltransferase polyketide synthases (trans-AT PKSs) create diverse natural products. This study reveals an unusual oxygenase module that installs methylated oximes on-line, expanding the toolbox for trans-AT PKS engineering.

Keywords:
Bacterial Natural ProductsBiosynthesisOximePolyketidesX-Ray Crystallography

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Area of Science:

  • Biochemistry
  • Molecular Biology
  • Natural Product Biosynthesis

Background:

  • Modular trans-acyltransferase polyketide synthases (trans-AT PKSs) are crucial for synthesizing complex polyketide natural products.
  • trans-AT PKSs offer greater chemical diversity compared to cis-AT PKSs.
  • The lobatamide A PKS is a notable example, featuring a unique methylated oxime modification.

Purpose of the Study:

  • To biochemically characterize the mechanism of oxime formation in the lobatamide A PKS.
  • To elucidate the structural basis of the oxygenase's catalytic activity and protein interactions.
  • To expand the engineering capabilities of trans-AT PKS for novel polyketide synthesis.

Main Methods:

  • Biochemical assays to demonstrate on-line functionality of the oxygenase module.
  • X-ray crystallography to determine the oxygenase crystal structure.
  • Site-directed mutagenesis to identify key residues and interactions.

Main Results:

  • The unusual oxygenase-containing bimodule was confirmed to install methylated oximes on-line.
  • A catalytic model for the oxygenase was proposed based on structural analysis and mutagenesis.
  • Key protein-protein interactions essential for the observed chemistry were identified.

Conclusions:

  • Oxime-forming machinery has been added to the biomolecular engineering toolbox for trans-AT PKS.
  • This advancement enables the introduction of masked aldehyde functionalities into diverse polyketides.
  • The findings pave the way for creating novel polyketide natural products with tailored chemical properties.