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Uncertainty quantification of spectral predictions using deep neural networks
Sneha Verma1, Nik Khadijah Nik Aznan2, Kathryn Garside2
1Chemistry - School of Natural and Environmental Sciences, Newcastle University, Newcastle upon Tyne, NE1 7RU, UK. tom.penfold@ncl.ac.uk.
Bootstrap resampling accurately quantifies uncertainty in deep neural network predictions for transition metal X-ray absorption spectra. This method ensures over 90% of predicted spectral intensities are within a 3-sigma range of true values.
Area of Science:
- Computational materials science
- Spectroscopy
- Machine learning applications
Background:
- Deep neural networks (DNNs) are increasingly used for predicting complex material properties.
- Accurate uncertainty quantification is crucial for reliable DNN predictions in scientific applications.
- Transition metal K-edge X-ray absorption near-edge structure (XANES) spectroscopy provides insights into electronic structure.
Purpose of the Study:
- To evaluate the effectiveness of uncertainty quantification (UQ) methods for DNN-based XANES spectral predictions.
- To compare deep ensembles and bootstrap resampling for UQ in this context.
- To assess the performance of a multi-layer perceptron (MLP) model with UQ for transition metal XANES.
Main Methods:
- Implementation of deep ensembles and bootstrap resampling as UQ techniques.
- Development and application of a multi-layer perceptron (MLP) model for predicting XANES spectra.
- Validation using held-out data for nine first-row transition metal K-edge XANES spectra.
Main Results:
- Bootstrap resampling demonstrated a high degree of accuracy in uncertainty assessment.
- Over 90% of predicted spectral intensities fell within ±3 standard deviations (σ) of the true values for held-out data.
- The MLP model combined with bootstrap resampling provided reliable uncertainty estimates for XANES spectra.
Conclusions:
- Bootstrap resampling is a viable and accurate method for quantifying uncertainty in DNN predictions of transition metal XANES spectra.
- The developed MLP model with bootstrap UQ can be a valuable tool for materials science research.
- This work highlights the importance of UQ for trustworthy AI in scientific discovery.
Related Concept Videos
Uncertainty: Overview
Uncertainty: Confidence Intervals
Propagation of Uncertainty from Random Error
Propagation of Uncertainty from Systematic Error
Prediction Intervals
However, the point estimate is most likely not the exact value of the population parameter, but close to it. After calculating point estimates, we construct interval estimates, called confidence intervals or prediction intervals. This prediction interval comprises a range of values unlike the point estimate and is a better predictor of the observed sample value, y.
Estimation of the Physical Quantities

