Embracing cohort heterogeneity in clinical machine learning development: a step toward generalizable models.
Michiel Schinkel1, Frank C Bennis2, Anneroos W Boerman3
1Center for Experimental and Molecular Medicine (CEMM), Location Academic Medical Center, Amsterdam UMC Location University of Amsterdam, Meibergdreef 9, 1105 AZ, Amsterdam, The Netherlands. m.schinkel@amsterdamumc.nl.
Averaging prediction models across multiple cohorts significantly improves performance in new settings compared to single-cohort models. This approach enhances model generalizability, a benefit often overlooked in current prediction model development guidelines.
Area of Science:
- Biostatistics
- Machine Learning
- Epidemiology
Background:
- Prediction models are crucial in various scientific fields.
- Current guidelines often focus on single-cohort data for model development.
- The generalizability of models trained on limited data is a persistent challenge.
Purpose of the Study:
- To illustrate the benefits of averaging prediction models over multiple cohorts.
- To demonstrate improved performance of multi-cohort models in novel settings.
- To highlight the need for updated prediction model development guidelines.
Main Methods:
- Comparative analysis of prediction models.
- Training models on single-cohort versus multi-cohort data.
- Evaluating model performance on unseen data.
Main Results:
- Models trained on averaged multi-cohort data significantly outperform single-cohort models.
- Increased data diversity from multiple cohorts enhances predictive accuracy.
- The benefit of averaging is evident even with equivalent total training data size.
Conclusions:
- Averaging prediction models across cohorts is a simple yet powerful strategy.
- Multi-cohort model averaging enhances generalizability and robustness.
- Existing guidelines for prediction model development should incorporate multi-cohort approaches.
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