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Updated: Jul 29, 2025

Antibiotic Efficacy Testing in an Ex vivo Model of Pseudomonas aeruginosa and Staphylococcus aureus Biofilms in the Cystic Fibrosis Lung
Published on: January 22, 2021
Staphylococcus aureus persisters are associated with reduced clearance in a catheter-associated biofilm infection
Trenten J Theis1, Trevor A Daubert1, Kennedy E Kluthe1
1Department of Biology, University of Nebraska at Kearney, Kearney, NE, United States.
Background:
Staphylococcus aureus causes a wide variety of infections, many of which are chronic or relapsing in nature. Antibiotic therapy is often ineffective against S. aureus biofilm-mediated infections. Biofilms are difficult to treat partly due to their tolerance to antibiotics, however the underlying mechanism responsible for this remains unknown. One possible explanation is the presence of persister cells-dormant-like cells that exhibit tolerance to antibiotics. Recent studies have shown a connection between a fumC (fumarase C, a gene in the tricarboxylic acid cycle) knockout strain and increased survival to antibiotics, antimicrobial peptides, and in a Drosophila melanogaster model.
Objective:
It remained unclear whether a S. aureus high persister strain would have a survival advantage in the presence of innate and adaptive immunity. To further investigate this, a fumC knockout and wild type strains were examined in a murine catheter-associated biofilm model.
Results:
Interestingly, mice struggled to clear both S. aureus wild type and the fumC knockout strains. We reasoned both biofilm-mediated infections predominantly consisted of persister cells. To determine the persister cell population within biofilms, expression of a persister cell marker (Pcap5A::dsRED) in a biofilm was examined. Cell sorting of biofilms challenged with antibiotics revealed cells with intermediate and high expression of cap5A had 5.9-and 4.5-fold higher percent survival compared to cells with low cap5A expression. Based on previous findings that persisters are associated with reduced membrane potential, flow cytometry analysis was used to examine the metabolic state of cells within a biofilm. We confirmed cells within biofilms had reduced membrane potential compared to both stationary phase cultures (2.5-fold) and exponential phase cultures (22.4-fold). Supporting these findings, cells within a biofilm still exhibited tolerance to antibiotic challenge following dispersal of the matrix through proteinase K.
Conclusion:
Collectively, these data show that biofilms are largely comprised of persister cells, and this may explain why biofilm infections are often chronic and/or relapsing in clinical settings.
Insights
Staphylococcus aureus biofilms are largely composed of dormant persister cells, explaining their chronic nature and antibiotic tolerance. This study investigated persister cells in a murine model, revealing their significant role in biofilm infections.
Area of Science:
- Microbiology
- Infectious Diseases
- Bacterial Pathogenesis
Background:
- Staphylococcus aureus infections are often chronic and difficult to treat with antibiotics, particularly biofilm-mediated infections.
- The mechanism behind antibiotic tolerance in S. aureus biofilms is not fully understood, but persister cells are a potential factor.
- Previous research linked a fumC knockout strain to increased survival against antibiotics and antimicrobial peptides.
Purpose of the Study:
- To investigate if a high persister Staphylococcus aureus strain has a survival advantage within innate and adaptive immunity.
- To examine the role of persister cells in a murine catheter-associated biofilm model.
Main Methods:
- A murine catheter-associated biofilm model was used to compare wild type and fumC knockout S. aureus strains.
- Persister cell populations within biofilms were quantified using a Pcap5A::dsRED reporter and flow cytometry.
- Membrane potential of biofilm cells was analyzed via flow cytometry to assess metabolic state.
Main Results:
- Mice had difficulty clearing both wild type and fumC knockout S. aureus biofilms, suggesting biofilms consist mainly of persister cells.
- Cells with intermediate and high Pcap5A expression showed significantly higher survival rates when biofilms were challenged with antibiotics.
- Biofilm cells exhibited reduced membrane potential compared to planktonic cultures and retained antibiotic tolerance even after matrix dispersal.
Conclusions:
- Staphylococcus aureus biofilms are predominantly composed of persister cells.
- The high proportion of persister cells in biofilms likely contributes to the chronic and relapsing nature of these infections.
- Understanding persister cell mechanisms is crucial for developing effective treatments against biofilm infections.
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HAIs significantly increase the cost of health care. Extended stays in healthcare institutions, increased disability, increased costs of medications, including specialized antibiotics, and prolonged recovery times add to the patient's expenses and the healthcare institution and funding bodies.

