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Updated: Jul 28, 2025

Fluorescence-Based Detection of FEN1 Nuclease Activity and Screening of Small-Molecule Inhibitors
Published on: June 27, 2025
Post-translational Modifications by Acyl Groups Regulate FEN1's Activities and Play Essential Roles in Cell
Yue Xiao1,2, Mingyu Yin1,2, Yiyi Wang1,2
1Institute of Biophysics, College of Life Sciences, Zhejiang University, Hangzhou 310058, China.
Background:
Flap endonuclease 1 (FEN1), well known for its structural-specific nuclease, possessing 5'-flap endonuclease and 5'-3' exonuclease activities, is mainly involved in DNA replication and repair. Protein lysine acetylation is an important posttranslational modification that could regulate numerous proteins' activity, subcellular localization, protein-protein interaction etc., and influences many biological processes. Our previous studies on integrated succinylome profiles found that succinylation and acetylation levels of FEN1 would change under different conditions. Succinylation at FEN1 Lys200 site results in the accumulation of damaged DNA and increased susceptibility to fork-stalling agents. The interplay with other forms of modification could affects its protein interaction affinity and thus contribute to genome stability.
Objective:
This article studied the biological role of FEN1 by acyl modification in HeLa cells.
Method:
In order to explore the function of FEN1 acylation in cells, we mimicked the presence or absence of acetylation or succinylation by mutating key amino acids to glutamic acid and glutamine. We carried out a series of experiments including cell cycle, MTS, enzyme kinetics measurements, immunofluorescence and so on.
Results:
The absence of acylation of FEN1 leads to the blocked cell cycle process and the reduced efficiency of FEN1 on its DNA substrates, affecting the interaction of FEN1 with both repair and replication related proteins and thus its role in the repair of DNA damage.
Conclusion:
We have verified acyl groups could modify Lys125, Lys252 and Lys254 of FEN1. Acylation level of these three is important for enzyme activity, cell proliferation and DNA damage response, thus contributing to genome stability.
Insights
Acyl modification of Flap endonuclease 1 (FEN1) is crucial for DNA repair and cell proliferation. Altering FEN1 acylation impacts its enzyme activity and interactions, thereby maintaining genome stability.
Area of Science:
- Molecular Biology
- Biochemistry
- Cell Biology
Background:
- Flap endonuclease 1 (FEN1) is a key enzyme in DNA replication and repair, with essential 5'-flap endonuclease and 5'-3' exonuclease activities.
- Protein lysine acylation, including acetylation and succinylation, are posttranslational modifications that regulate protein function and biological processes.
- FEN1's succinylation and acetylation levels vary, with succinylation at Lys200 linked to DNA damage accumulation.
Purpose of the Study:
- To investigate the biological role of Flap endonuclease 1 (FEN1) acylation in HeLa cells.
- To understand how modifications like acetylation and succinylation affect FEN1 function and genome stability.
Main Methods:
- Mimicked acylation states (acetylation/succinylation absence) by mutating key FEN1 amino acids to glutamic acid and glutamine.
- Conducted cell cycle analysis, MTS assays, enzyme kinetics, and immunofluorescence to assess FEN1 function.
- Utilized site-directed mutagenesis to explore the impact of specific lysine modifications.
Main Results:
- Absence of FEN1 acylation resulted in cell cycle arrest.
- Reduced FEN1 enzyme efficiency on DNA substrates was observed without acylation.
- FEN1 acylation status affects its interactions with DNA repair and replication proteins.
Conclusions:
- Acyl groups modify Lys125, Lys252, and Lys254 of FEN1.
- The acylation level of these specific sites is critical for FEN1 enzyme activity, cell proliferation, and DNA damage response.
- FEN1 acylation plays a vital role in maintaining genome stability.
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