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Updated: Jul 28, 2025

Unravelling the Function of a Bacterial Effector from a Non-cultivable Plant Pathogen Using a Yeast Two-hybrid Screen
Published on: January 20, 2017
A pathogen effector FOLD diversified in symbiotic fungi
Albin Teulet1, Clément Quan1, Edouard Evangelisti1
1Sainsbury Laboratory, University of Cambridge, Cambridge, CB2 1LR, UK.
Abstract:
Pathogenic fungi use secreted effector proteins to suppress immunity and support their infection, but effectors have also been reported from fungi that engage in nutritional symbioses with plants. Sequence-based effector comparisons between pathogens and symbiotic arbuscular mycorrhizal (AM) fungi are hampered by the huge diversity of effector sequences even within closely related microbes. To find sequence-divergent but structurally similar effectors shared between symbiotic and pathogenic fungi, we compared secreted protein structure models of the AM fungus Rhizophagus irregularis to known pathogen effectors. We identified proteins with structural similarity to known Fusarium oxysporum f. sp. lycopersici dual domain (FOLD) effectors, which occur in low numbers in several fungal pathogens. Contrastingly, FOLD genes from AM fungi (MycFOLDs) are found in enlarged and diversified gene families with higher levels of positive selection in their C-terminal domains. Our structure model comparison suggests that MycFOLDs are similar to carbohydrate-binding motifs. Different MycFOLD genes are expressed during colonisation of different hosts and MycFOLD-17 transcripts accumulate in plant intracellular arbuscules. The exclusive presence of MycFOLDs across unrelated plant-colonising fungi, their inducible expression, lineage-specific sequence diversification and transcripts in arbuscules suggest that FOLD proteins act as effectors during plant colonisation of symbiotic and pathogenic fungi.
Insights
Structural similarities between fungal pathogen and symbiotic arbuscular mycorrhizal (AM) fungi effectors were identified. These findings suggest conserved roles for dual domain (FOLD) proteins in plant colonization by diverse fungi.
Area of Science:
- Mycology
- Plant-Pathogen Interactions
- Symbiotic Fungi
Background:
- Pathogenic fungi secrete effector proteins to suppress host immunity.
- Effectors are also found in symbiotic fungi, like arbuscular mycorrhizal (AM) fungi, which form nutritional symbioses with plants.
- Sequence-based comparisons of effectors between pathogens and AM fungi are challenging due to high sequence diversity.
Purpose of the Study:
- To identify sequence-divergent but structurally similar effector proteins shared between symbiotic and pathogenic fungi.
- To investigate the role of dual domain (FOLD) proteins in fungal-plant interactions.
Main Methods:
- Compared secreted protein structure models of the AM fungus Rhizophagus irregularis with known pathogen effectors.
- Utilized structural similarity searches to identify conserved effector families.
- Analyzed gene family expansion, diversification, and positive selection in AM fungal FOLD genes (MycFOLDs).
- Examined MycFOLD gene expression patterns during plant colonization.
Main Results:
- Identified MycFOLD proteins in AM fungi structurally similar to pathogen FOLD effectors.
- MycFOLD genes are present in expanded and diversified families in AM fungi, with evidence of positive selection.
- Structural modeling suggests MycFOLDs possess carbohydrate-binding motifs.
- MycFOLD genes exhibit differential expression during host colonization, with MycFOLD-17 accumulating in plant arbuscules.
Conclusions:
- MycFOLD proteins are widely distributed across unrelated plant-colonizing fungi, suggesting a conserved function.
- Inducible expression, sequence diversification, and localization in arbuscules indicate MycFOLDs function as effectors in both symbiotic and pathogenic plant colonization.
- FOLD proteins represent a conserved class of fungal effectors involved in plant interactions.
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