Related Experiment Video
Updated: Jul 28, 2025

Single-Molecule Tracking Microscopy - A Tool for Determining the Diffusive States of Cytosolic Molecules
Published on: September 5, 2019
Robust Estimation of Position-Dependent Anisotropic Diffusivity Tensors from Stochastic Trajectories
Tiago S Domingues1, Ronald R Coifman2, Amir Haji-Akbari1
1Department of Chemical and Environmental Engineering, Yale University, New Haven, Connecticut 06520, United States.
New methods estimate anisotropic and position-dependent diffusivity in confined materials. These filtered covariance estimators accurately capture spatial variations and offer functional estimates, improving upon existing techniques.
Area of Science:
- Physics
- Materials Science
- Computational Chemistry
Background:
- Confinement significantly alters material properties compared to bulk.
- Characterizing position-dependent and anisotropic properties in confined matter is challenging.
- Existing methods for estimating transport properties like diffusivity are not rigorously generalized for confined systems.
Purpose of the Study:
- To develop novel estimators for anisotropic and position-dependent diffusivity tensors in confined systems.
- To validate the proposed estimators using simulated stochastic trajectories with known diffusivity profiles.
- To provide a more robust and functional approach to diffusivity estimation in confined matter.
Main Methods:
- Development of two filtered covariance estimators.
- Application of estimators to stochastic trajectories with predefined diffusivity profiles.
- Validation against known diffusivity variations spanning orders of magnitude and diverse functional forms.
Main Results:
- The proposed estimators accurately capture spatial variations in diffusivity.
- The kernel-based approach demonstrates robustness to implementation details like localization functions and time discretization.
- Performance significantly surpasses estimators relying solely on local covariance.
- Functional estimates of diffusivity are achievable, moving beyond pointwise data.
Conclusions:
- The novel filtered covariance estimators effectively characterize anisotropic and position-dependent diffusivity in confined materials.
- The kernel-based method offers a robust and versatile tool for analyzing transport properties in complex environments.
- While generally robust, estimators show increased susceptibility to time discretization near hard boundaries, a common issue for covariance-based methods.
More Related Videos
12:15Image Processing Protocol for the Analysis of the Diffusion and Cluster Size of Membrane Receptors by Fluorescence Microscopy
Published on: April 9, 2019
12:05A Simple, Robust, and High Throughput Single Molecule Flow Stretching Assay Implementation for Studying Transport of Molecules Along DNA
Published on: October 1, 2017
Related Concept Videos
Protein Diffusion in the Membrane
Carrier Transport
Drift Current:
The drift of charge carriers is started by an external electric field (E). Charged particles, such as electrons and holes, experience an acceleration between collisions with lattice atoms. For electrons, this results in a drift velocity (vd) given by: