Related Experiment Video
Updated: Jul 27, 2025

Tools to Study the Role of Architectural Protein HMGB1 in the Processing of Helix Distorting, Site-specific DNA Interstrand Crosslinks
Published on: November 10, 2016
C11orf54 promotes DNA repair via blocking CMA-mediated degradation of HIF1A
Junyang Tan1,2, Wenjun Wang1,2, Xinjie Liu1,2
1The Sixth Affiliated Hospital of Jinan University, Jinan University, 523573, Dongguan, Guangdong, China.
Abstract:
C11orf54 is an ester hydrolase highly conserved across different species. C11orf54 has been identified as a biomarker protein of renal cancers, but its exact function remains poorly understood. Here we demonstrate that C11orf54 knockdown decreases cell proliferation and enhances cisplatin-induced DNA damage and apoptosis. On the one hand, loss of C11orf54 reduces Rad51 expression and nuclear accumulation, which results in suppression of homologous recombination repair. On the other hand, C11orf54 and HIF1A competitively interact with HSC70, knockdown of C11orf54 promotes HSC70 binding to HIF1A to target it for degradation via chaperone-mediated autophagy (CMA). C11orf54 knockdown-mediated HIF1A degradation reduces the transcription of ribonucleotide reductase regulatory subunit M2 (RRM2), which is a rate-limiting RNR enzyme for DNA synthesis and DNA repair by producing dNTPs. Supplement of dNTPs can partially rescue C11orf54 knockdown-mediated DNA damage and cell death. Furthermore, we find that Bafilomycin A1, an inhibitor of both macroautophagy and chaperone-mediated autophagy, shows similar rescue effects as dNTP treatment. In summary, we uncover a role of C11orf54 in regulating DNA damage and repair through CMA-mediated decreasing of HIF1A/RRM2 axis.
Insights
C11orf54 protein knockdown impairs homologous recombination repair and DNA synthesis by reducing HIF1A and RRM2 levels via chaperone-mediated autophagy. This leads to increased DNA damage and cell death in cancer cells.
Area of Science:
- Molecular Biology
- Cancer Biology
- Biochemistry
Background:
- C11orf54 is a conserved ester hydrolase and a potential biomarker for renal cancers.
- The precise biological function of C11orf54 remains largely unelucidated.
- Understanding C11orf54's role is crucial for cancer research and therapeutic development.
Purpose of the Study:
- To investigate the functional role of C11orf54 in cellular processes.
- To elucidate the molecular mechanisms underlying C11orf54's involvement in DNA damage and repair.
- To explore the potential of targeting C11orf54 in cancer therapy.
Main Methods:
- C11orf54 knockdown using RNA interference.
- Assessment of cell proliferation, DNA damage, and apoptosis.
- Analysis of homologous recombination repair (HRR) pathway proteins (e.g., Rad51).
- Investigation of protein-protein interactions using co-immunoprecipitation.
- Chaperone-mediated autophagy (CMA) pathway analysis.
- Measurement of ribonucleotide reductase regulatory subunit M2 (RRM2) expression.
- Supplementation experiments with deoxynucleotides (dNTPs) and Bafilomycin A1.
Main Results:
- C11orf54 knockdown suppressed cell proliferation and enhanced cisplatin-induced DNA damage and apoptosis.
- Loss of C11orf54 reduced Rad51 expression and nuclear accumulation, impairing homologous recombination repair.
- C11orf54 knockdown promoted HSC70-mediated degradation of HIF1A via chaperone-mediated autophagy.
- Reduced HIF1A levels led to decreased RRM2 transcription, impacting dNTP availability for DNA synthesis and repair.
- Supplementation with dNTPs or Bafilomycin A1 partially rescued the DNA damage and cell death phenotypes.
Conclusions:
- C11orf54 plays a significant role in regulating DNA damage and repair pathways.
- The study uncovers a novel mechanism involving C11orf54, chaperone-mediated autophagy, HIF1A, and RRM2 in controlling DNA integrity.
- These findings provide new insights into the function of C11orf54 and suggest potential therapeutic strategies targeting this axis in cancer.
Related Concept Videos
DNA Damage can Stall the Cell Cycle
Restarting Stalled Replication Forks
DNA Damage Can Stall the Cell Cycle
Homologous Recombination
Overview of DNA Repair
Chemically...
DNA Helicases

