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Characterizing Individual Protein Aggregates by Infrared Nanospectroscopy and Atomic Force Microscopy
Published on: September 12, 2019
A machine learning potential for simulating infrared spectra of nanosilicate clusters
Zeyuan Tang1, Stefan T Bromley2,3, Bjørk Hammer1
1Center for Interstellar Catalysis, Department of Physics and Astronomy, Aarhus University, Ny Munkegade 120, Aarhus C 8000, Denmark.
Machine learning potentials offer accurate and efficient interatomic force fields for nanosilicate clusters. This approach accelerates simulations and enables the extraction of anharmonic infrared spectra for astrophysical applications.
Area of Science:
- Chemical Physics
- Computational Chemistry
- Materials Science
Background:
- Machine learning (ML) models can achieve the accuracy of ab initio methods for interatomic potentials at a lower computational cost.
- Efficient generation of training data is crucial for developing accurate ML interatomic potentials.
- Nanosilicate clusters are important in astrophysical environments, but their properties require accurate simulation methods.
Purpose of the Study:
- To develop a neural network-based ML interatomic potential for nanosilicate clusters.
- To establish an efficient protocol for generating training data for ML potentials.
- To enable the simulation of nanosilicate clusters and extraction of their anharmonic infrared spectra.
Main Methods:
- An accurate and efficient protocol for collecting training data was applied.
- Initial training data were generated using normal modes and farthest point sampling.
- An active learning strategy, employing an ensemble of ML models, was used to extend the training dataset.
- Parallel sampling over structures accelerated the data generation process.
- Molecular dynamics simulations were performed using the developed ML potential.
Main Results:
- A neural network-based ML interatomic potential for nanosilicate clusters was successfully constructed.
- The ML potential achieved high accuracy comparable to ab initio methods with reduced computational cost.
- The protocol efficiently generated necessary training data, including through active learning.
- Molecular dynamics simulations of nanosilicate clusters of various sizes were performed.
- Anharmonic infrared spectra were extracted from the simulations.
Conclusions:
- The developed ML potential accurately describes nanosilicate clusters.
- The efficient data generation protocol, including active learning, is effective for ML potential development.
- The extracted anharmonic infrared spectra provide insights into silicate dust properties in interstellar and circumstellar environments.
- This work facilitates a deeper understanding of astrophysical chemical physics.
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