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Updated: Jul 27, 2025

Characterizing Individual Protein Aggregates by Infrared Nanospectroscopy and Atomic Force Microscopy
Published on: September 12, 2019
A machine learning potential for simulating infrared spectra of nanosilicate clusters
Zeyuan Tang1, Stefan T Bromley2,3, Bjørk Hammer1
1Center for Interstellar Catalysis, Department of Physics and Astronomy, Aarhus University, Ny Munkegade 120, Aarhus C 8000, Denmark.
Abstract:
The use of machine learning (ML) in chemical physics has enabled the construction of interatomic potentials having the accuracy of ab initio methods and a computational cost comparable to that of classical force fields. Training an ML model requires an efficient method for the generation of training data. Here, we apply an accurate and efficient protocol to collect training data for constructing a neural network-based ML interatomic potential for nanosilicate clusters. Initial training data are taken from normal modes and farthest point sampling. Later on, the set of training data is extended via an active learning strategy in which new data are identified by the disagreement between an ensemble of ML models. The whole process is further accelerated by parallel sampling over structures. We use the ML model to run molecular dynamics simulations of nanosilicate clusters with various sizes, from which infrared spectra with anharmonicity included can be extracted. Such spectroscopic data are needed for understanding the properties of silicate dust grains in the interstellar medium and in circumstellar environments.
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