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Updated: Jul 27, 2025

Efficient Chromatin Immunoprecipitation using Limiting Amounts of Biomass
Published on: May 1, 2013
p300 Is an Obligate Integrator of Combinatorial Transcription Factor Inputs
John J Ferrie1,2, Jonathan P Karr1, Thomas G W Graham1,2
1Department of Molecular and Cell Biology, University of California, Berkeley, CA, USA.
Abstract:
Transcription coactivators are proteins or protein complexes that mediate transcription factor (TF) function. However, they lack DNA binding capacity, prompting the question of how they engage target loci. Three non-exclusive hypotheses have been posited: coactivators are recruited by complexing with TFs, by binding histones through epigenetic reader domains, or by partitioning into phase-separated compartments through their extensive intrinsically disordered regions (IDRs). Using p300 as a prototypical coactivator, we systematically mutated its annotated domains and show by single-molecule tracking in live cells that coactivator-chromatin binding depends entirely on combinatorial binding of multiple TF-interaction domains. Furthermore, we demonstrate that acetyltransferase activity negatively impacts p300-chromatin association and that the N-terminal TF-interaction domains regulate that activity. Single TF-interaction domains are insufficient for both chromatin binding and regulation of catalytic activity, implying a principle that could broadly inform eukaryotic gene regulation: a TF must act in coordination with other TFs to recruit coactivator activity.
Insights
Transcription coactivators bind chromatin via multiple transcription factor interactions, not single domains. This coordination is essential for regulating gene activity and protein function.
Area of Science:
- Molecular Biology
- Epigenetics
- Gene Regulation
Background:
- Transcription coactivators are crucial for gene expression but lack DNA-binding domains.
- Their recruitment to target DNA loci remains incompletely understood.
- Hypotheses include recruitment by transcription factors, histone binding, or phase separation via intrinsically disordered regions (IDRs).
Approach:
- Systematic mutation of domains in the prototypical coactivator p300.
- Single-molecule tracking in live cells to observe coactivator-chromatin interactions.
- Analysis of the impact of acetyltransferase activity and TF-interaction domains on chromatin association.
Key Points:
- Coactivator-chromatin binding relies on the combinatorial interaction of multiple TF-binding domains.
- Acetyltransferase activity negatively regulates coactivator association with chromatin.
- N-terminal TF-interaction domains modulate p300's catalytic activity.
Conclusions:
- Individual TF-interaction domains are insufficient for robust chromatin binding or activity regulation.
- Coactivator recruitment and function necessitate coordinated interactions with multiple transcription factors.
- This highlights a fundamental principle for eukaryotic gene regulation.
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