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Emerging Activity Patterns and Synaptogenesis in Dissociated Hippocampal Cultures
Jyothsna Suresh1,2, Mark Saddler1, Vytas Bindokas3
1Department of Pediatrics, The University of Chicago, Chicago, IL 60637, USA.
Biorxiv : the Preprint Server for Biology
|June 9, 2023
Summary
This study introduces a new automated method for quantifying synapses in developing hippocampal neurons. The findings reveal synaptic pruning during network maturation, correlating with changes in neural activity.
Area of Science:
- Neuroscience
- Developmental Biology
- Computational Biology
Background:
- Hippocampal neuron cultures show predictable network activity development within three weeks.
- Understanding neural circuit organization requires characterizing network structure and synaptogenesis.
- Existing automated synapse quantification methods have limitations, including arbitrary thresholding and lack of random-chance correction.
Approach:
- Developed and validated a novel, automated synapse quantification algorithm with minimal operator intervention.
- Applied the algorithm to confocal microscopy images of dissociated hippocampal neurons at various developmental stages (5, 8, 14, 20 days in vitro).
- Quantified excitatory and inhibitory synaptogenesis during the critical period of network activity pattern emergence.
Key Points:
- Synaptic density increases with neuronal maturation, correlating with rising network spiking activity.
- A decrease in excitatory synaptic density was observed in the third week of maturation.
- This reduction in excitatory synapses suggests synaptic pruning, coinciding with the onset of regular network bursting activity.
Conclusions:
- The developed algorithm offers a robust method for synapse quantification in neuronal cultures.
- Synaptic pruning of excitatory connections occurs during the third week of hippocampal network maturation.
- This pruning event is temporally linked to the emergence of synchronized bursting activity in the developing neural network.

