DNA Deamination Is Required for Human APOBEC3A-Driven Hepatocellular Carcinoma In Vivo

Jordan A Naumann1,2, Prokopios P Argyris1,2,3,4, Michael A Carpenter5,6

  • 1Department of Biochemistry, Molecular Biology and Biophysics, University of Minnesota, Minneapolis, MN 55455, USA.

Insights

The DNA deaminase APOBEC3A drives tumor formation by altering DNA, not RNA. Its catalytic activity is essential for this cancer-promoting mechanism, establishing it as a key driver in malignancies.

Area of Science:

  • Molecular Biology
  • Cancer Research
  • Genetics

Background:

  • The APOBEC3 (A3) enzyme family, known for antiviral functions, is increasingly recognized as a significant source of mutations in human cancers.
  • APOBEC3-induced C-to-T and C-to-G mutations in TCA and TCT motifs are found in over 70% of human malignancies.
  • Previous studies demonstrated that human APOBEC3A and APOBEC3B can promote tumor formation in vivo.

Purpose of the Study:

  • To investigate the molecular mechanism underlying APOBEC3A-driven tumor development.
  • To determine if APOBEC3A alone can drive tumor formation without TP53 knockdown.
  • To elucidate the role of APOBEC3A's catalytic activity in tumorigenesis.

Main Methods:

  • Utilized the murine Fah liver complementation and regeneration system.
  • Assessed tumor development driven by APOBEC3A alone.
  • Investigated the requirement of the catalytic glutamic acid residue (E72) for tumor formation.
  • Examined the impact of a separation-of-function mutant with impaired DNA deamination but intact RNA editing activity.

Main Results:

  • APOBEC3A alone was sufficient to drive tumor development in the murine model.
  • The catalytic glutamic acid residue (E72) of APOBEC3A was essential for promoting tumor formation.
  • An APOBEC3A mutant defective in DNA deamination but retaining RNA editing activity failed to promote tumor formation.

Conclusions:

  • APOBEC3A acts as a "master driver" of tumor formation.
  • The DNA deamination activity of APOBEC3A is the critical mechanism underlying its oncogenic potential.
  • These findings highlight the direct role of APOBEC3A's enzymatic function in cancer development.

Related Concept Videos

Base Excision Repair01:54

Base Excision Repair

One of the common DNA damages is the chemical alteration of single bases by alkylation, oxidation, or deamination. The altered bases cause mispairing and strand breakage during replication. This type of damage causes minimal change to the DNA double helix structure and can be repaired by the base excision repair (BER) pathways. BER corrects damaged DNA sequences by removing the damaged base and restoring the original base sequence using the complementary strand as a template.
The first step of...
22.7K
DNA Damage can Stall the Cell Cycle02:37

DNA Damage can Stall the Cell Cycle

In response to DNA damage, cells can pause the cell cycle to assess and repair the breaks. However, the cell must check the DNA at certain critical stages during the cell cycle. If the cell cycle pauses before DNA replication, the cells will contain twice the amount of DNA. On the other hand, if cells arrest after DNA replication but before mitosis, they will contain four times the normal amount of DNA. With a host of specialized proteins at their disposal,cells must use the right protein at...
9.2K
Nucleotide Excision Repair01:38

Nucleotide Excision Repair

DNA Distortion and Damage
Cells are regularly exposed to mutagens—factors in the environment that can damage DNA and generate mutations. UV radiation is one of the most common mutagens and is estimated to introduce a significant number of changes in DNA. These include bends or kinks in the structure, which can block DNA replication or transcription. If these errors are not fixed, the damage can cause mutations, which in turn can result in cancer or disease depending on which sequences are...
3.6K
Overview of DNA Repair02:25

Overview of DNA Repair

In order to be passed through generations, genomic DNA must be undamaged and error-free. However, every day, DNA in a cell undergoes several thousand to a million damaging events by natural causes and external factors. Ionizing radiation such as UV rays, free radicals produced during cellular respiration, and hydrolytic damage from metabolic reactions can alter the structure of DNA. Damages caused include single-base alteration, base dimerization, chain breaks, and cross-linkage.
Chemically...
31.2K
RNA Editing02:23

RNA Editing

RNA editing is a post-transcriptional modification where a precursor mRNA (pre-mRNA) nucleotide sequence is changed by base insertion, deletion, or modification. The extent of RNA editing varies from a few hundred bases, in mitochondrial DNA of trypanosomes, to a just single base, in nuclear genes of mammals. Even a single base change in the pre-mRNA can convert a codon for one amino acid into the codon for another amino acid or a stop codon. This type of re-coding can significantly affect the...
9.1K
Abnormal Proliferation02:23

Abnormal Proliferation

Under normal conditions, most adult cells remain in a non-proliferative state unless stimulated by internal or external factors to replace lost cells. Abnormal cell proliferation is a condition in which the cell's growth exceeds and is uncoordinated with normal cells. In such situations, cell division persists in the same excessive manner even after cessation of the stimuli, leading to persistent tumors. The tumor arises from the damaged cells that replicate to pass the damage to the...
4.6K