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Updated: Jul 26, 2025

Immunopeptidomics: Isolation of Mouse and Human MHC Class I- and II-Associated Peptides for Mass Spectrometry Analysis
Published on: October 15, 2021
Universal open MHC-I molecules for rapid peptide loading and enhanced complex stability across HLA allotypes
Yi Sun1,2, Michael C Young1,2, Claire H Woodward1,2
1Center for Computational and Genomic Medicine, Department of Pathology and Laboratory Medicine, The Children's Hospital of Philadelphia, Philadelphia, PA 19104.
Engineered "open MHC-I" molecules offer enhanced stability for identifying disease antigens and T cell receptors. This breakthrough aids in developing new autologous therapeutics by stabilizing major histocompatibility complex class I molecules.
Area of Science:
- Immunology
- Structural Biology
- Biochemistry
Background:
- Major histocompatibility complex class I (MHC-I) molecules are crucial for immune response but are inherently unstable with suboptimal ligands.
- This instability poses challenges in identifying disease-relevant antigens and developing antigen-specific T cell receptor (TCR)-based therapeutics.
Purpose of the Study:
- To engineer conformationally stable, peptide-receptive MHC-I molecules.
- To overcome the limitations of polymorphic and unstable MHC-I structures for therapeutic development.
Main Methods:
- Engineered disulfide bond between heavy chain (HC) and β2 microglobulin (β2m) to create "open MHC-I".
- Biophysical characterization (e.g., thermal stability assays).
- Solution Nuclear Magnetic Resonance (NMR) spectroscopy to analyze structural and dynamic effects.
Main Results:
- Open MHC-I molecules exhibit enhanced thermal stability with low- to moderate-affinity peptides.
- Disulfide bond induces conformational changes, stabilizing MHC-I in an open state.
- Facilitates peptide exchange across diverse human leukocyte antigen (HLA) allotypes and MHC-Ib molecules.
Conclusions:
- Engineered open MHC-I provides a universal, stable platform for antigen discovery and TCR repertoire analysis.
- This platform supports the development of autologous therapeutics targeting polymorphic HLA-I and MHC-Ib molecules.
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