Related Experiment Video
Updated: Jul 26, 2025

Targeted Next-generation Sequencing and Bioinformatics Pipeline to Evaluate Genetic Determinants of Constitutional Disease
Published on: April 4, 2018
A Novel PMVK Variant Associated with Familial Porokeratosis
Wenjing Zhang1, Xinmiao Nie2, Lei Shi2
1Department of Nephrology, Henan Provincial Clinical Research Center for Kidney Disease, Henan Provincial People's Hospital and People's Hospital of Zhengzhou University, Zhengzhou, China.
Background:
Porokeratosis is a rare chronic progressive hypokeratotic skin disease, possibly related to the mevalonate pathway. Variations in four enzymes, including phosphomevalonate kinase (PMVK) may alter this pathway, ultimately leading to porokeratosis.
Objectives:
The aim of the study was to identify the causative gene variant of porokeratosis in a Chinese family and investigate its population frequency and pathogenicity.
Method:
In this study, Sanger sequencing was used to identify the gene variant causative of porokeratosis; its population frequency was investigated by polymerase chain reaction-restriction fragment length polymorphism in 4 patients and three normal individuals as well as in 100 normal unrelated controls; finally, the pathogenicity of the mutation and the associated structural changes were predicted.
Results:
We identified a novel heterozygous missense variant, c.207G>T (p. Lys69Asn) in the PMVK gene. This variant was found in all patients but not in the normal individuals in this family or in the 100 controls. In silico analysis indicated that the variant was pathogenic; p.Lys69Asn changed the length of the α-helix and the hydrogen bond pattern compared with the wild-type protein.
Conclusions:
The novel variant c.207G>T (p. Lys69Asn) in the PMVK gene was the causative variant in this porokeratosis family. This finding provides further evidence for the genetic basis of this disease.
Insights
A novel phosphomevalonate kinase (PMVK) gene variant, c.207G>T (p. Lys69Asn), is identified as the cause of porokeratosis in a Chinese family. This discovery strengthens the understanding of the genetic underpinnings of this rare skin condition.
Area of Science:
- Genetics
- Dermatology
- Biochemistry
Background:
- Porokeratosis is a rare, progressive skin disorder potentially linked to the mevalonate pathway.
- Alterations in key enzymes like phosphomevalonate kinase (PMVK) may disrupt this pathway, contributing to porokeratosis development.
Discussion:
- This study identified a novel heterozygous missense variant (c.207G>T, p. Lys69Asn) in the PMVK gene within a Chinese family affected by porokeratosis.
- The identified variant was absent in healthy family members and 100 unrelated controls, suggesting its causative role.
- In silico analysis predicted the variant to be pathogenic, altering protein structure, including alpha-helix length and hydrogen bonding patterns.
Key Insights:
- A novel pathogenic PMVK gene variant (c.207G>T, p. Lys69Asn) is confirmed as the causative factor for porokeratosis in the studied Chinese family.
- The variant's absence in control populations underscores its specificity to the disease.
- The findings provide critical evidence for the genetic etiology of porokeratosis.
Outlook:
- Further research into the PMVK gene and mevalonate pathway could reveal new therapeutic targets for porokeratosis.
- Investigating the population frequency of this specific PMVK variant in diverse ethnic groups is warranted.
- Understanding the precise molecular mechanisms by which PMVK variants lead to porokeratosis is crucial for developing targeted treatments.
Related Concept Videos
Cytoskeletal Linker Proteins - Plakins
Single Nucleotide Polymorphisms-SNPs
Pleiotropy
Comparing Copy Number Variations and SNPs
Copy number variations or CNVs are the structural variations that cover more than 1kb of DNA sequence. The single nucleotide polymorphism (SNP), on the other hand, is a single nucleotide change or a point mutation that is found in more than 1%...
Animal Mitochondrial Genetics
Pinching-off of Coated Vesicles

