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Updated: Jul 26, 2025

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Whole-Brain Single-Cell Imaging and Analysis of Intact Neonatal Mouse Brains Using MRI, Tissue Clearing, and Light-Sheet Microscopy
Published on: August 1, 2022
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Bacterial meningitis in the early postnatal mouse studied at single-cell resolution
Jie Wang1,2, Amir Rattner1, Jeremy Nathans1,2,3,4
1Department of Molecular Biology and Genetics, Johns Hopkins University School of Medicine, Baltimore, United States.
Elife
|June 15, 2023
Summary
Bacterial meningitis impacts infants and the elderly. This study shows endothelial cell responses to E. coli infection are primarily driven by Toll-like receptor 4 (TLR4) signaling, not macrophage activity.
Area of Science:
- Neuroscience
- Immunology
- Cell Biology
Background:
- Bacterial meningitis poses significant risks, particularly to vulnerable populations.
- Understanding the cellular responses within the meninges during infection is crucial for developing effective treatments.
Purpose of the Study:
- To investigate the cellular and molecular responses of meningeal cell types to early postnatal E. coli infection in mice.
- To elucidate the signaling pathways, particularly Toll-like receptor 4 (TLR4), involved in the meningeal vascular response to bacterial meningitis.
Main Methods:
- Single nucleus RNA sequencing (snRNAseq) to analyze transcriptomic changes in meningeal cells.
- Confocal imaging of leptomeninges and dura for cell quantification and morphology assessment.
- Genetic (Tlr4 knockout) and pharmacologic (liposomal clodronate) perturbations to assess immune cell and signaling roles.
Main Results:
- Distinct transcriptomic changes were observed in endothelial cells (ECs), macrophages, and fibroblasts upon infection.
- Leptomeningeal ECs showed redistribution of CLDN5 and PECAM1, with compromised blood-brain barrier integrity.
- Vascular response was largely mediated by TLR4 signaling, as evidenced by similar responses to LPS and blunted responses in Tlr4 mice.
- Depletion of macrophages or knockout of Ccr2 had minimal impact on EC responses.
Conclusions:
- Endothelial cell responses to E. coli meningitis are predominantly driven by intrinsic EC sensing of lipopolysaccharide (LPS) via TLR4.
- Macrophage activity and monocyte chemoattraction appear less critical for the early EC response in this model.

