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Continuous Fluorescence-Based Endonuclease-Coupled DNA Methylation Assay to Screen for DNA Methyltransferase Inhibitors
Published on: August 5, 2022
Alteration of DNMT1/DNMT3A by eribulin elicits global DNA methylation changes with potential therapeutic implications
Meisam Bagheri1,2, Min Kyung Lee3, Kristen E Muller2,4
1Department of Molecular and Systems Biology, Geisel School of Medicine at Dartmouth, Lebanon, NH 03766.
Abstract:
Triple-negative breast cancer (TNBC) is an aggressive disease subtype with limited treatment options. Eribulin is a chemotherapeutic approved for the treatment of advanced breast cancer that has been shown to elicit epigenetic changes. We investigated the effect of eribulin treatment on genome-scale DNA methylation patterns in TNBC cells. Following repeated treatment, The results showed that eribulin-induced changes in DNA methylation patterns evident in persister cells. Eribulin also affected the binding of transcription factors to genomic ZEB1 binding sites and regulated several cellular pathways, including ERBB and VEGF signaling and cell adhesion. Eribulin also altered the expression of epigenetic modifiers including DNMT1, TET1, and DNMT3A/B in persister cells. Data from primary human TNBC tumors supported these findings: DNMT1 and DNMT3A levels were altered by eribulin treatment in human primary TNBC tumors. Our results suggest that eribulin modulates DNA methylation patterns in TNBC cells by altering the expression of epigenetic modifiers. These findings have clinical implications for using eribulin as a therapeutic agent.
Insights
Eribulin treatment alters DNA methylation patterns in triple-negative breast cancer (TNBC) cells, affecting gene expression and cellular pathways. This epigenetic modulation offers potential new therapeutic strategies for TNBC.
Area of Science:
- Oncology
- Epigenetics
- Molecular Biology
Background:
- Triple-negative breast cancer (TNBC) is an aggressive subtype with limited therapeutic options.
- Eribulin, a chemotherapeutic agent, is approved for advanced breast cancer and known to induce epigenetic modifications.
- Understanding eribulin's impact on TNBC epigenetics is crucial for developing novel treatment strategies.
Approach:
- Investigated genome-scale DNA methylation patterns in TNBC cells following repeated eribulin treatment.
- Analyzed changes in transcription factor binding, specifically at ZEB1 sites.
- Examined the expression of key epigenetic modifiers, including DNMT1, TET1, and DNMT3A/B.
- Validated findings in primary human TNBC tumors.
Key Points:
- Eribulin treatment induced significant changes in DNA methylation patterns in TNBC persister cells.
- Eribulin affected transcription factor binding and regulated critical cellular pathways like ERBB and VEGF signaling.
- The drug altered the expression of epigenetic modifiers (DNMT1, TET1, DNMT3A/B) in TNBC cells and human tumors.
Conclusions:
- Eribulin modulates DNA methylation in TNBC by altering the expression of epigenetic modifiers.
- These findings highlight the potential clinical utility of eribulin in TNBC therapy.
- Eribulin's epigenetic effects provide a mechanistic basis for its efficacy in treating TNBC.
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