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Updated: Jul 26, 2025

Continuous Fluorescence-Based Endonuclease-Coupled DNA Methylation Assay to Screen for DNA Methyltransferase Inhibitors
Published on: August 5, 2022
DNA Methyltransferase 1 Targeting Using Guadecitabine Inhibits Prostate Cancer Growth by an Apoptosis-Independent
Dev Karan1, Manohar Singh1, Seema Dubey1
1Department of Pathology, MCW Cancer Center, Prostate Cancer Center of Excellence, Medical College of Wisconsin, 8701 Watertown Plank Road, Milwaukee, WI 53226, USA.
Abstract:
Epigenetic alterations such as DNA methylation and histone modifications are implicated in repressing several tumor suppressor genes in prostate cancer progression. In this study, we determined the anti-prostate cancer effect of a small molecule drug guadecitabine (gDEC) that inhibits/depletes the DNA methylation writer DNA methyltransferase 1 (DNMT1). gDEC inhibited prostate cancer cell growth and proliferation in vitro without activating the apoptotic cascade. Molecular studies confirmed DNMT1 depletion and modulated epithelial-mesenchymal transition markers E-cadherin and β-catenin in several prostate cancer cell lines (LNCaP, 22Rv1, and MDA PCa 2b). gDEC treatment also significantly inhibited prostate tumor growth in vivo in mice (22Rv1, MDA PCa 2b, and PC-3 xenografts) without any observed toxicities. gDEC did not impact the expression of androgen receptor (AR) or AR-variant 7 (AR-V7) nor sensitize the prostate cancer cells to the anti-androgen enzalutamide in vitro. In further investigating the mechanism of cytoreduction by gDEC, a PCR array analyses of 84 chromatin modifying enzymes demonstrated upregulation of several lysine-specific methyltransferases (KMTs: KMT2A, KMT2C, KMT2E, KMT2H, KMT5A), confirmed by additional expression analyses in vitro and of harvested xenografts. Moreover, gDEC treatment increased global histone 3 lysine 4 mono-and di-methylation (H3K4me1 and H3K4me2). In sum, gDEC, in addition to directly depleting the corepressor DNMT1, upregulated KMT activating epigenetic enzymes, activating terminal epithelial program activation, and prostate cancer cell cycling exits independent of apoptosis.
Insights
Guadecitabine (gDEC) inhibits prostate cancer growth by depleting DNA methyltransferase 1 (DNMT1) and upregulating epigenetic enzymes. This epigenetic drug promotes cell cycle exit independent of apoptosis, showing promise in preclinical models.
Area of Science:
- Epigenetics
- Cancer Biology
- Pharmacology
Background:
- Epigenetic alterations, including DNA methylation and histone modifications, play a crucial role in suppressing tumor suppressor genes during prostate cancer progression.
- DNA methyltransferase 1 (DNMT1) is a key enzyme responsible for DNA methylation and is often dysregulated in cancer.
Purpose of the Study:
- To investigate the anti-prostate cancer effects of the small molecule drug guadecitabine (gDEC), which inhibits and depletes DNMT1.
- To elucidate the molecular mechanisms underlying gDEC's anti-cancer activity in prostate cancer models.
Main Methods:
- In vitro studies using prostate cancer cell lines (LNCaP, 22Rv1, MDA PCa 2b) to assess cell growth, proliferation, apoptosis, and epithelial-mesenchymal transition (EMT) markers.
- In vivo studies using mouse xenograft models (22Rv1, MDA PCa 2b, PC-3) to evaluate tumor growth inhibition and toxicity.
- Molecular analyses including DNMT1 depletion confirmation, EMT marker assessment, androgen receptor (AR) and AR-variant 7 (AR-V7) expression, and PCR array analysis of chromatin modifying enzymes.
Main Results:
- Guadecitabine (gDEC) inhibited prostate cancer cell growth and proliferation in vitro without inducing apoptosis.
- gDEC treatment led to DNMT1 depletion and modulated EMT markers (E-cadherin, β-catenin) in prostate cancer cell lines.
- In vivo, gDEC significantly inhibited tumor growth in multiple prostate cancer xenograft models without observable toxicity.
- gDEC did not affect AR or AR-V7 expression and did not sensitize cells to enzalutamide.
- gDEC upregulated several lysine-specific methyltransferases (KMTs) and increased global histone 3 lysine 4 mono- and di-methylation (H3K4me1, H3K4me2).
Conclusions:
- Guadecitabine (gDEC) demonstrates significant anti-prostate cancer effects both in vitro and in vivo by depleting DNMT1.
- gDEC's mechanism involves upregulation of activating epigenetic enzymes, promoting epithelial program activation, and inducing cell cycle exit independently of apoptosis.
- These findings suggest gDEC as a potential epigenetic therapeutic agent for prostate cancer, acting through novel mechanisms.
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