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Updated: Jul 25, 2025

Methodology for the Study of Horizontal Gene Transfer in Staphylococcus aureus
Published on: March 10, 2017
Conjugative transfer of streptococcal prophages harboring antibiotic resistance and virulence genes
Jinhu Huang1, Xingyang Dai1, Zuowei Wu2
1MOE Joint International Research Laboratory of Animal Health and Food Safety, College of Veterinary Medicine, Nanjing Agricultural University, Nanjing, 210095, China.
Abstract:
Prophages play important roles in the transduction of various functional traits, including virulence factors, but remain debatable in harboring and transmitting antimicrobial resistance genes (ARGs). Herein we characterize a prevalent family of prophages in Streptococcus, designated SMphages, which harbor twenty-five ARGs that collectively confer resistance to ten antimicrobial classes, including vanG-type vancomycin resistance locus and oxazolidinone resistance gene optrA. SMphages integrate into four chromosome attachment sites by utilizing three types of integration modules and undergo excision in response to phage induction. Moreover, we characterize four subtypes of Alp-related surface proteins within SMphages, the lethal effects of which are extensively validated in cell and animal models. SMphages transfer via high-frequency conjugation that is facilitated by integrative and conjugative elements from either donors or recipients. Our findings explain the widespread of SMphages and the rapid dissemination of ARGs observed in members of the Streptococcus genus.
Insights
This study identifies SMphages in Streptococcus, which carry numerous antimicrobial resistance genes (ARGs) conferring resistance to ten drug classes. These phages spread rapidly, explaining the prevalence of antibiotic resistance in Streptococcus infections.
Area of Science:
- Microbiology
- Genetics
- Molecular Biology
Background:
- Prophages are known to transfer functional traits, but their role in transmitting antimicrobial resistance genes (ARGs) is debated.
- Streptococcus species are significant human pathogens, and understanding ARG dissemination is crucial for public health.
Purpose of the Study:
- To characterize a prevalent family of prophages in Streptococcus, termed SMphages.
- To investigate the antimicrobial resistance genes (ARGs) harbored by SMphages and their transmission mechanisms.
Main Methods:
- Characterization of SMphage genomes, including identification of ARGs and integration sites.
- Analysis of SMphage integration and excision mechanisms.
- Validation of SMphage-encoded surface protein virulence using cell and animal models.
- Investigation of SMphage transfer via conjugation, including the role of integrative and conjugative elements.
Main Results:
- SMphages harbor twenty-five ARGs conferring resistance to ten antimicrobial classes, including vancomycin (vanG) and oxazolidinone (optR).
- SMphages integrate into four chromosomal sites via three integration modules and can be induced to excise.
- Four subtypes of Alp-related surface proteins encoded by SMphages exhibit lethal effects in vitro and in vivo.
- High-frequency conjugation facilitates SMphage transfer, aided by integrative and conjugative elements.
Conclusions:
- SMphages are a significant factor in the widespread dissemination of ARGs within the Streptococcus genus.
- The identified ARGs and virulence factors contribute to the adaptability and pathogenicity of Streptococcus.
- Understanding SMphage biology is key to combating antimicrobial resistance in these important bacterial pathogens.
Related Concept Videos
Transduction
Conjugation
Mechanism of Conjugation
Horizontal Gene Transfer
Transposons
Types of Genetic Transfer Between Organisms

