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RelB is a potential molecular biomarker for immunotherapy in human pan-cancer
Jintao Wu1, Xinyu Yu1, Hongyu Zhu1
1Jiangsu Key Laboratory of Molecular and Translational Cancer Research, Department of Thoracic Surgery, Jiangsu Cancer Hospital & Nanjing Medical University Affiliated Cancer Hospital & Jiangsu Institute of Cancer Research, Nanjing, China.
Abstract:
Introduction: The nuclear factor kB (NF-κB) pathway emerges as a critical regulator of immune responses and is often dysregulated in human cancers. It consists of a family of transcription factors involved in many biological responses. Activated NF-κB subunits results in the nuclear translocation and activation of transcription, and the NF-κB pathway is known to influence the transcription of many genes. Noncanonical NF-κB and its components have been shown to have effects, usually protumorigenic, in many different cancer types. Besides, NF-κB signaling had diverse and complicated roles in cancer with studies that NF-κB could both contribute to tumor promotion and suppression of oncogenesis relying on the cellular context. RelB, a member of noncanonical NF-κB was abnormally regulated in most cancer types, however the molecular features and clinical signature of RelB expression, as well as its role in cancer immunity in human pan-cancer remains to be elucidated. Methods: We used the open databases to explore RelB expression, clinical features and the association with tumor-infiltration cells in human pan-cancer. In this study, we investigated the aberration expression and prognostic significance of RelB, and the correlation with clinicopathological characters and immune cells infiltration in various cancers. The Cancer Genome Atlas (TCGA) and Genotype-Tissue Expression (GTEx) databases were used to analyze the mRNA expression level in different cancer types. Kaplan-Meier analysis and Cox regression were used to explore the prognostic significance of RelB in human pan-cancer. Then we took advantage of the TCGA database to analyze the relationship between RelB expression and DNA methylation, the infiltration of immune cells, immune checkpoint genes, tumor mutation burden (TMB), microsatellite instability (MSI), mismatch repair (MSS). Results: Higher expression of RelB was significantly detected in human cancer tissues and a high level of RelB expression was significantly linked with a worse outcome in LGG, KIPAN, ACC, UVM, LUAD,THYM, GBM, LIHC and TGCT but associated with a favorable overall survival (OS) in SARC, SKCM and BRCA. According to the Human Protein Altas database, RelB was considered as an independent factor in breast cancer and renal cancer prognosis. GSEA results revealed that RelB was involved in many oncogenesisrelated processes and immunity-related pathways. RelB was significantly correlated with DNA methylation in 13 types of cancer. Meanwhile, RelB expression was associated with TMB in 5 types of cancer and MSI in 8 types of cancer. In the final, we analyzed the relationship between RelB expression and immune-infiltration cells in human pan-cancer, which suggested RelB could be a promising therapeutic target for cancer immunotherapy. Discussion: Our study further provided insights into a deeper understanding of RelB as a prognostic biomarker.
Insights
RelB, a noncanonical NF-κB member, shows dysregulated expression in cancers. Its expression correlates with patient outcomes and immune cell infiltration, suggesting potential as a pan-cancer prognostic biomarker and therapeutic target.
Area of Science:
- Oncology
- Immunology
- Molecular Biology
Background:
- The nuclear factor kappa B (NF-κB) pathway is crucial for immune responses and frequently dysregulated in cancers.
- RelB, a component of the noncanonical NF-κB pathway, has roles in cancer, but its pan-cancer clinical significance and immune associations are unclear.
Purpose of the Study:
- To investigate the expression, prognostic value, and clinical correlations of RelB in human pan-cancer.
- To explore the relationship between RelB and tumor-infiltrating immune cells, DNA methylation, and genomic instability.
Main Methods:
- Utilized TCGA and GTEx databases for mRNA expression analysis.
- Performed Kaplan-Meier and Cox regression for prognostic significance.
- Analyzed associations with DNA methylation, immune cell infiltration, TMB, MSI, and immune checkpoint genes.
Main Results:
- RelB overexpression was observed in many cancers, linked to worse outcomes in several (e.g., LGG, LUAD) but favorable survival in others (e.g., BRCA).
- RelB expression correlated with DNA methylation, TMB, and MSI across various cancer types.
- RelB showed significant associations with immune cell infiltration, indicating its role in cancer immunity.
Conclusions:
- RelB serves as a potential prognostic biomarker in pan-cancer.
- RelB's involvement in oncogenesis and immune modulation suggests it as a promising therapeutic target for cancer immunotherapy.
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