CRISPR prime editing for unconstrained correction of oncogenic KRAS variants
Gayoung Jang1,2, Jiyeon Kweon1, Yongsub Kim3,4
1Department of Cell and Genetic Engineering, Asan Medical Institute of Convergence Science and Technology, Asan Medical Center, University of Ulsan College of Medicine, Seoul, Republic of Korea.
Abstract:
KRAS is the most commonly mutated RAS family gene and is a primary cause of the occurrence of several types of cancer. However, KRAS mutations have several unique and diverse molecular identities, making it difficult to find specific treatments. Here, we developed universal pegRNAs which can correct all types of G12 and G13 oncogenic KRAS mutations with CRISPR-mediated prime editors (PEs). The universal pegRNA successfully corrected 12 types of KRAS mutations, accounting for 94% of all known KRAS mutations, by up to 54.8% correction frequency in HEK293T/17 cells. We also applied the universal pegRNA to correct endogenous KRAS mutations in human cancer cells and found that G13D KRAS mutation was successfully corrected to wild-type KRAS sequences with up to 40.6% correction frequency without indel mutations. We propose prime editing with the universal pegRNA as a 'one-to-many' potential therapeutic strategy for KRAS oncogene variants.
Insights
Scientists developed universal prime editing guide RNAs (pegRNAs) to correct common KRAS oncogene mutations. This approach shows promise as a versatile therapeutic strategy for various KRAS-driven cancers.
Area of Science:
- Molecular Biology
- Genetics
- Oncology
Background:
- KRAS mutations are prevalent in many cancers, driving tumor growth.
- Diverse KRAS mutations present challenges for developing targeted therapies.
- The RAS family includes KRAS as the most frequently mutated gene.
Purpose of the Study:
- To develop a universal prime editing guide RNA (pegRNA) for KRAS mutations.
- To assess the efficacy of prime editing in correcting oncogenic KRAS variants.
- To explore a potential 'one-to-many' therapeutic strategy for KRAS-driven cancers.
Main Methods:
- Development of universal pegRNAs targeting G12 and G13 KRAS mutations.
- CRISPR-mediated prime editing (PE) system utilization.
- Testing in HEK293T/17 cells and human cancer cell lines with endogenous mutations.
Main Results:
- Universal pegRNA corrected 12 KRAS mutation types (94% of known variants) with up to 54.8% efficiency in cell lines.
- Successful correction of endogenous G13D KRAS mutation in human cancer cells.
- Achieved up to 40.6% correction frequency for G13D mutation without inducing indel mutations.
Conclusions:
- Prime editing with universal pegRNAs offers a promising strategy for targeting multiple KRAS oncogene variants.
- This approach could provide a versatile therapeutic option for a broad spectrum of KRAS-mutated cancers.
- The developed universal pegRNA demonstrates significant potential for clinical application in precision oncology.
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