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Updated: Jul 24, 2025

Genome-wide Analysis of Histone Modifications Distribution using the Chromatin Immunoprecipitation Sequencing Method in Magnaporthe oryzae
Published on: June 2, 2021
The epigenetic regulator Set9 harmonizes fungal development, secondary metabolism, and colonization capacity of
Ling Hao1, Mengjuan Zhang1, Chi Yang2
1Key Laboratory of Pathogenic Fungi and Mycotoxins of Fujian Province, Key Laboratory of Biopesticide and Chemical Biology of Education Ministry, Proteomic Research Center, and School of Life Sciences, Fujian Agriculture and Forestry University, Fuzhou 350002, China.
Abstract:
As a widely distributed food-borne pathogenic fungus, Aspergillus flavus and its secondary metabolites, mainly aflatoxin B1 (AFB1), pose a great danger to humans. It is urgent to reveal the complex regulatory network of toxigenic and virulence of this fungus. The bio-function of Set9, a SET-domain-containing histone methyltransferase, is still unknown in A. flavus. By genetic engineering means, this study revealed that, through catalyzing H4K20me2 and -me3, Set9 is involved in fungal growth, reproduction, and mycotoxin production via the orthodox regulation pathway, and regulates fungal colonization on crop kernels through adjusting fungal sensitivity reactions to oxidation stress and cell wall integrity stress. Further domain deletion and point mutation inferred that the SET domain is the core element in catalyzing H4K20 methylation, and D200 site of the domain is the key amino acid in the active center of the methyltransferase. Combined with RNA-seq analysis, this study revealed that Set9 regulates the aflatoxin gene cluster by the AflR-like protein (ALP), other than traditional AflR. This study revealed the epigenetic regulation mechanism of fungal morphogenesis, secondary metabolism, and pathogenicity of A. flavus mediated by the H4K20-methyltransferase Set9, which might provide a potential new target for early prevention of contamination of A. flavus and its deadly mycotoxins.
Insights
Set9, a histone methyltransferase, regulates Aspergillus flavus growth, reproduction, and aflatoxin production by catalyzing H4K20 methylation. This epigenetic regulator offers a potential target for preventing fungal contamination and mycotoxin risks.
Area of Science:
- Mycology
- Epigenetics
- Molecular Biology
Background:
- Aspergillus flavus is a food-borne pathogen producing toxic aflatoxins.
- The regulatory mechanisms of fungal virulence and toxigenesis are complex and not fully understood.
- The function of Set9, a histone methyltransferase, in A. flavus remains uncharacterized.
Purpose of the Study:
- To investigate the bio-function of Set9 in Aspergillus flavus.
- To elucidate the epigenetic regulation of fungal growth, reproduction, mycotoxin production, and pathogenicity.
- To identify potential targets for controlling A. flavus contamination.
Main Methods:
- Genetic engineering (gene deletion, domain deletion, point mutation)
- Histone methylation analysis (H4K20me2 and H4K20me3)
- RNA-sequencing (RNA-seq)
- Fungal stress response assays (oxidative and cell wall integrity)
Main Results:
- Set9 catalyzes H4K20me2 and H4K20me3, impacting fungal growth, reproduction, and mycotoxin production.
- Set9 regulates fungal colonization by modulating responses to oxidative and cell wall stress.
- The SET domain, particularly the D200 site, is crucial for Set9's methyltransferase activity.
- Set9 regulates the aflatoxin gene cluster via an AflR-like protein (ALP), distinct from AflR.
Conclusions:
- Set9 is an epigenetic regulator of Aspergillus flavus morphogenesis, secondary metabolism, and pathogenicity.
- H4K20 methylation by Set9 is a key mechanism controlling fungal virulence and aflatoxin biosynthesis.
- Set9 represents a potential novel target for managing A. flavus infections and aflatoxin contamination.
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