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Updated: Jul 24, 2025

Modeling the Functional Network for Spatial Navigation in the Human Brain
Published on: October 13, 2023
NetPlotBrain: A Python package for visualizing networks and brains.
Silvia Fanton1, William Hedley Thompson1,2
1Department of Clinical Neuroscience, Karolinska Institutet, Stockholm, Sweden.
NetPlotBrain is a new Python package that simplifies creating accurate network visualizations on brain images. It offers an easy-to-use interface and integrates with neuroimaging tools for high-quality results.
Area of Science:
- Neuroimaging
- Network Theory
- Data Visualization
Background:
- Network visualizations are complex, multidimensional, and information-rich, making accurate and effective figure generation challenging.
- The layout of network visualizations is crucial for conveying network or spatial properties.
- Generating high-quality network plots often requires expert knowledge and significant time.
Purpose of the Study:
- Introduce NetPlotBrain, a Python package for creating network visualizations on brain images.
- Provide a user-friendly interface for customizing and highlighting network results.
- Ensure plot accuracy through integration with TemplateFlow and other Python software.
Main Methods:
- Developed NetPlotBrain as a Python package compatible with Python 3.9+.
- Integrated NetPlotBrain with TemplateFlow for accurate spatial referencing.
- Enabled integration with NetworkX and network-based statistics implementations.
Main Results:
- NetPlotBrain offers a high-level interface for easy customization of network plots.
- The package ensures plot accuracy via TemplateFlow integration.
- Facilitates seamless integration with existing neuroimaging and network analysis software.
Conclusions:
- NetPlotBrain is a versatile and user-friendly package for generating high-quality network figures on brain images.
- It simplifies complex visualization tasks in neuroimaging and network theory research.
- Promotes accurate and reproducible network visualizations within the open research community.
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