Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Protein-protein Interfaces02:04

Protein-protein Interfaces

12.6K
Many proteins form complexes to carry out their functions, making protein-protein interactions (PPIs) essential for an organism's survival. Most PPIs are stabilized by numerous weak noncovalent chemical forces. The physical shape of the interfaces determines the way two proteins interact. Many globular proteins have closely-matching shapes on their surfaces, which form a large number of weak bonds. Additionally, many PPIs occur between two helices or between a surface cleft and a...
12.6K
Protein Families02:47

Protein Families

15.5K
Protein families are groups of homologous proteins; that is, they have similarities in amino acid sequences and three-dimensional structures. Protein families usually occur because of gene duplication, where an additional copy of a gene is inserted into the genome of an organism.   Mutations that change the amino acids but still allow the protein to be properly synthesized, will lead to new protein family members.   If these new proteins contain similar amino acids in key...
15.5K
Protein Networks02:26

Protein Networks

4.0K
An organism can have thousands of different proteins, and these proteins must cooperate to ensure the health of an organism. Proteins bind to other proteins and form complexes to carry out their functions. Many proteins interact with multiple other proteins creating a complex network of protein interactions.
These interactions can be represented through maps depicting protein-protein interaction networks, represented as nodes and edges. Nodes are circles that are representative of a protein,...
4.0K
Conservation of Protein Domains Over Different Proteins02:26

Conservation of Protein Domains Over Different Proteins

10.9K
Protein domains are small structurally independent units that are part of a single amino acid chain.  Although these domains are often structurally independent, they may rely on synergistic effects to perform their functions as part of a larger protein. Protein domains may be conserved within the same organism, as well as across different organisms.
A limited set of protein domains often duplicate and recombine during evolution. These domains can be organized in different combinations to...
10.9K
Protein Organization01:24

Protein Organization

6.6K
Proteins are polymers of amino acid residues. They are versatile and responsible for different cellular functions, including DNA replication, molecular transport, catalysis, and structural support. Proteins have a hierarchical structure comprising at least three levels of organization: primary, secondary, and tertiary structure. Some large proteins have a quaternary structure where individual protein subunits are linked together.
The primary structure of a protein is its amino acid sequence....
6.6K
Mechanical Protein Functions01:58

Mechanical Protein Functions

5.0K
Proteins perform many mechanical functions in a cell. These proteins can be classified into two general categories- proteins that generate mechanical forces and proteins that are subjected to mechanical forces. Proteins providing mechanical support to the structure of the cell, such as keratin, are subjected to mechanical force, whereas proteins involved in cell movement and transport of molecules across cell membranes, such as an ion pump, are examples of generating mechanical force. 
5.0K

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

[Chemical constituents from a Tibetan medicine Meconopsis horridula].

Zhongguo Zhong yao za zhi = Zhongguo zhongyao zazhi = China journal of Chinese materia medica·2014
Same author

[Chemical constituents from whole plants of Aconitum tanguticum (III)].

Zhongguo Zhong yao za zhi = Zhongguo zhongyao zazhi = China journal of Chinese materia medica·2014
Same author

Plasma metabonomics study on Chinese medicine syndrome evolution of heart failure rats caused by LAD ligation.

BMC complementary and alternative medicine·2014
Same author

A versatile complementation assay for cell-to-cell and long distance movements by cucumber mosaic virus based agro-infiltration.

Virus research·2014
Same author

Composition of EPS fractions from suspended sludge and biofilm and their roles in microbial cell aggregation.

Chemosphere·2014
Same author

CXCL9 and CXCL10 accelerate acute transplant rejection mediated by alloreactive memory T cells in a mouse retransplantation model.

Experimental and therapeutic medicine·2014
Same journal

[Recent progress and policy recommendations for biomanufacturing technology in China].

Sheng wu gong cheng xue bao = Chinese journal of biotechnology·2026
Same journal

[CRISPR/Cas9-mediated knockout of the <i>Soc</i> gene in T4 bacteriophage and mutant construction].

Sheng wu gong cheng xue bao = Chinese journal of biotechnology·2026
Same journal

[High-throughput fluorescence-activated droplet sorting of polyethylene terephthalate hydrolases based on fluorescent nanoparticle biosensors].

Sheng wu gong cheng xue bao = Chinese journal of biotechnology·2026
Same journal

[Machine learning-optimized solid-state fermentation of non-grain biomass for enhanced feed protein production].

Sheng wu gong cheng xue bao = Chinese journal of biotechnology·2026
Same journal

[Growth and metabolic characteristics and kinetic modeling of MDCK adherent cells cultured in basket bioreactors].

Sheng wu gong cheng xue bao = Chinese journal of biotechnology·2026
Same journal

[Metabolic engineering of <i>Saccharomyces cerevisiae</i> for <i>de novo</i> biosynthesis of gibberellin A<sub>3</sub>].

Sheng wu gong cheng xue bao = Chinese journal of biotechnology·2026
See all related articles

Related Experiment Video

Updated: Jul 24, 2025

Author Spotlight: A Computational Approach to Decipher Amino Acid Preferences in Multispecific Protein-Protein Interactions
06:50

Author Spotlight: A Computational Approach to Decipher Amino Acid Preferences in Multispecific Protein-Protein Interactions

Published on: January 26, 2024

1.9K

[Advances in machine learning for predicting protein functions].

Yanfei Chi1, Chun Li1,2, Xudong Feng1

  • 1Key Laboratory of Medical Molecule Science and Pharmaceutical Engineering, Ministry of Industry and Information Technology, Institute of Biochemical Engineering, Department of Chemical Engineering, School of Chemistry and Chemical Engineering, Beijing Institute of Technology, Beijing 100081, China.

Sheng Wu Gong Cheng Xue Bao = Chinese Journal of Biotechnology
|July 4, 2023
PubMed
Summary
This summary is machine-generated.

Predicting protein function is essential for medicine and drug development. Machine learning offers an efficient solution to accelerate the annotation of vast protein sequence data, overcoming experimental limitations.

Keywords:
artificial intelligencefunction predictionmachine learningprotein function

More Related Videos

Author Spotlight: Streamlining Protein Target Prediction and Validation via Molecular Docking and CETSA
10:21

Author Spotlight: Streamlining Protein Target Prediction and Validation via Molecular Docking and CETSA

Published on: February 23, 2024

2.7K
An Integrated Approach for Microprotein Identification and Sequence Analysis
09:37

An Integrated Approach for Microprotein Identification and Sequence Analysis

Published on: July 12, 2022

3.5K

Related Experiment Videos

Last Updated: Jul 24, 2025

Author Spotlight: A Computational Approach to Decipher Amino Acid Preferences in Multispecific Protein-Protein Interactions
06:50

Author Spotlight: A Computational Approach to Decipher Amino Acid Preferences in Multispecific Protein-Protein Interactions

Published on: January 26, 2024

1.9K
Author Spotlight: Streamlining Protein Target Prediction and Validation via Molecular Docking and CETSA
10:21

Author Spotlight: Streamlining Protein Target Prediction and Validation via Molecular Docking and CETSA

Published on: February 23, 2024

2.7K
An Integrated Approach for Microprotein Identification and Sequence Analysis
09:37

An Integrated Approach for Microprotein Identification and Sequence Analysis

Published on: July 12, 2022

3.5K

Area of Science:

  • Biochemistry and Molecular Biology
  • Bioinformatics
  • Computational Biology

Background:

  • Proteins are vital for cellular functions, making their functional understanding critical for medicine and drug discovery.
  • Enzyme applications in green synthesis are promising but hindered by high costs and diverse functionalities.
  • Experimental protein function determination is laborious and time-consuming, lagging behind rapid sequencing advancements.

Approach:

  • This review explores protein function annotation methods, detailing the evolution and application of machine learning (ML).
  • It highlights ML's role in addressing the challenge of annotating the growing volume of protein sequence data.
  • The focus is on ML-driven approaches for predicting enzyme functions and advancing protein research.

Key Points:

  • The increasing gap between sequenced proteins and annotated functions necessitates efficient prediction methods.
  • Machine learning provides a data-driven approach to overcome the limitations of experimental characterization.
  • AI-assisted tools are crucial for accelerating the discovery of protein and enzyme functions.

Conclusions:

  • Machine learning presents a powerful and efficient solution for protein function prediction.
  • AI integration promises to revolutionize protein research, particularly in enzyme function discovery.
  • Future research should focus on developing advanced AI models for comprehensive protein function annotation.