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The kingdom Archaeplastida encompasses red and green algae, along with land plants. Unlike other protists with chloroplasts that arose through secondary endosymbiosis, only red and green algae originated from primary endosymbiotic events. This diverse group of eukaryotic organisms contains chlorophyll and performs oxygenic photosynthesis.Algae exist in various forms, from large brown kelp in coastal waters to green scum in puddles and stains on rocks or soil. Some species are responsible for...
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The group Stramenopiles include some phototrophic microorganisms. Members of this group possess flagella covered in numerous short, hairlike extensions, a feature that inspired the group's name, derived from the Latin words for "straw" and "hair." Some of the main categories of Stramenopiles include diatoms, golden algae, and brown algae.Diatoms are unicellular, photosynthetic eukaryotes, with over 200 known genera. They play a key role in the planktonic communities of both marine and...
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Autofluorescence Imaging to Evaluate Red Algae Physiology
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Deep learning-based classification of microalgae using light and scanning electron microscopy images.

Mesut Ersin Sonmez1, Betul Altinsoy1, Betul Yilmaz Ozturk2

  • 1Department of Bioengineering, Faculty of Engineering, Karamanoglu Mehmetbey University, Karaman, Turkey.

Micron (Oxford, England : 1993)
|July 5, 2023
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Summary

Deep learning accurately identifies microalgae using light microscopy (LM) and scanning electron microscopy (SEM) images. This approach achieved 99% accuracy, outperforming traditional methods and highlighting cost-effective optical microscopy for algal identification.

Keywords:
CNNMicroalgaeSpecies ClassificationVGG16

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Area of Science:

  • Marine Biology
  • Biotechnology
  • Computational Science

Background:

  • Microalgae have vital industrial and ecological roles.
  • Algal blooms pose significant environmental threats, necessitating effective monitoring.
  • Current identification methods are time-consuming, labor-intensive, and costly.

Purpose of the Study:

  • To evaluate deep learning models for microalgae identification using both LM and SEM.
  • To compare the performance of various Convolutional Neural Network (CNN) architectures.
  • To investigate the efficacy of incorporating SEM images alongside traditional LM images.

Main Methods:

  • Utilized light microscopy (LM) and scanning electron microscopy (SEM) images of five microalgae species (two Cyanobacteria, three Chlorophyta).
  • Applied state-of-the-art Convolutional Neural Network (CNN) models: VGG16, MobileNet V2, Xception, NasnetMobile, and EfficientNetV2.
  • For the first time, integrated SEM images into deep learning-based microalgae identification.

Main Results:

  • Achieved exceptional classification accuracy of 99% for both LM and SEM images with VGG16 and EfficientNetV2 models.
  • Demonstrated high classification accuracies (>93%) for most models with SEM images.
  • NasnetMobile showed the lowest accuracy (87%) with SEM images, while other models performed well.

Conclusions:

  • Deep learning, particularly CNNs, offers a rapid and precise method for microalgae identification.
  • Incorporating SEM images alongside LM images enhances identification accuracy.
  • Cost-effective optical microscopy coupled with deep learning achieved superior results compared to electron microscopy for algal identification.