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WindowSHAP: An efficient framework for explaining time-series classifiers based on Shapley values.

Amin Nayebi1, Sindhu Tipirneni2, Chandan K Reddy2

  • 1Department of Systems and Industrial Engineering, University of Arizona, AZ, USA.

Journal of Biomedical Informatics
|July 6, 2023
PubMed
Summary
This summary is machine-generated.

WindowSHAP offers a novel framework for explaining time-series machine learning models, improving computational efficiency and explanation quality for clinical applications. This approach enhances understanding of complex predictions by using Shapley values on time-series data.

Keywords:
Explainable artificial intelligenceModel interpretationShapley valueTime-series data

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Area of Science:

  • Machine Learning Interpretability
  • Time-Series Analysis
  • Clinical Informatics

Background:

  • Explaining black-box machine learning models, especially deep learning, remains a significant challenge.
  • Interpreting time-series predictive models is crucial for high-stakes clinical applications.
  • Existing explanation methods often fail with time-varying features in time-series data.

Purpose of the Study:

  • Introduce WindowSHAP, a model-agnostic framework to explain time-series classifiers using Shapley values.
  • Address computational complexity and enhance explanation quality for long time-series data.
  • Provide a method applicable to clinical time-series data.

Main Methods:

  • Developed WindowSHAP by partitioning time-series data into sequential windows.
  • Implemented three algorithms: Stationary, Sliding, and Dynamic WindowSHAP.
  • Evaluated against KernelSHAP and TimeSHAP using perturbation and sequence analyses metrics on clinical data (TBI, critical care).

Main Results:

  • WindowSHAP significantly reduces computational complexity, decreasing CPU time by 80% for 120 time steps compared to KernelSHAP.
  • Demonstrated superior performance in explaining clinical time-series classifiers based on quantitative metrics.
  • Dynamic WindowSHAP algorithm effectively focuses on critical time steps, yielding more understandable explanations.

Conclusions:

  • WindowSHAP accelerates Shapley value calculations for time-series data.
  • The framework provides higher quality and more understandable explanations for clinical time-series classifiers.
  • WindowSHAP offers a practical solution for interpreting complex machine learning models in healthcare.