Fragment-Based Discovery of Novel VE-PTP Inhibitors Using Orthogonal Biophysical Techniques

Wataru Asano1, Kenji Yamanaka1, Yasunori Ohara1

  • 1Biological/Pharmacological Research Laboratories, Central Pharmaceutical Research Institute, Japan Tobacco Inc., 1-1 Murasaki-cho, Takatsuki, Osaka 569-1125, Japan.

Biochemistry
|July 6, 2023
PubMed

Insights

Researchers discovered Cpd-2, a novel and selective inhibitor for vascular endothelial protein tyrosine phosphatase (VE-PTP). This weakly acidic compound offers a new avenue for developing bioavailable drugs targeting VE-PTP for diseases like cancer.

Area of Science:

  • Biochemistry
  • Pharmacology
  • Molecular Biology

Background:

  • Tyrosine phosphorylation is a critical post-translational modification regulating biological processes and implicated in diseases such as cancer and atherosclerosis.
  • Vascular endothelial protein tyrosine phosphatase (VE-PTP) is crucial for vascular homeostasis and angiogenesis, making it a potential therapeutic target.
  • Currently, no drugs effectively target protein tyrosine phosphatases (PTPs), including VE-PTP.

Purpose of the Study:

  • To discover novel inhibitors of VE-PTP.
  • To identify a lead compound for the development of bioavailable VE-PTP inhibitors.
  • To explore new chemical scaffolds for PTP-targeted drug development.

Main Methods:

  • Fragment-based screening was employed to identify potential inhibitors.
  • Various biophysical techniques were utilized to characterize compound interactions.
  • Structure-activity relationship studies were conducted to optimize inhibitor properties.

Main Results:

  • A novel VE-PTP inhibitor, designated Cpd-2, was discovered.
  • Cpd-2 exhibits a weakly acidic structure and high selectivity, distinguishing it from existing strongly acidic inhibitors.
  • The compound represents a promising starting point for further drug development.

Conclusions:

  • Cpd-2 is the first identified VE-PTP inhibitor with a weakly acidic profile and high selectivity.
  • This discovery opens new possibilities for developing bioavailable VE-PTP inhibitors.
  • Targeting VE-PTP with novel inhibitors like Cpd-2 may offer therapeutic benefits for vascular-related diseases.