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Updated: Jul 23, 2025

MicroRNA-based Regulation of Picornavirus Tropism
Published on: February 6, 2017
Adenovirus VA RNAs impair maturation of primary microRNA
Ji Hyun Kim1, Chang Ho Lee2, Seong-Wook Lee1,2
1R&D Center, Rznomics Inc., Seongnam, Republic of Korea.
Background:
Adenovirus expresses two non-coding virus-associated (VA) RNAs: VA I RNA and VA II RNA. Adenovirus-expressed VA RNAs interfere with the microRNA (miRNA) pathway by competing with precursor miRNAs. The processing pattern of primary miRNA (pri-miRNA) and factors to affect its processing are not exactly known when using adenovirus for the delivery of pri-miRNA.
Methods:
To observe pri-miRNA processing, plasmid construct encoding pri-miRNA was co-transfected with VA I/II RNA expression plasmid, or recombinant adenovirus encoding pri-miRNA was generated and infected. Levels of miRNAs, VA I RNA and VA II RNA were analyzed by a quantitative real-time PCR (RT-PCR). VA I-II full-length RNA was analyzed by a RT-PCR. RNA immunoprecipitation analysis to pull-down the VA I-II full-length RNA binding with Drosha was conducted with Drosha antibody.
Results:
pri-miRNA was normally processed into mature miRNA when it was expressed in cells using plasmid. However, miRNA maturation was impaired when pri-miRNA was delivered and expressed using adenovirus. Of note, pri-miRNA processing was observed to be blocked by VA RNA expression. Such blocked processing could be recovered by introducing antisense RNA of VA RNA, anti-3'VA RNA. In addition, VA RNAs were transcribed into VA I-II full-length RNA, which was found to bind and sequester Drosha.
Conclusions:
Adenovirus infection downregulated the processing of pri-miRNAs in cells, and such downregulation could be derived from VA I-II full-length RNAs in pri-miRNA-like form through competitively binding to Drosha protein. These results indicated that the expression of adenovirus VA RNAs should be inhibited for successful delivery and expression of pri-miRNA or shRNA in cells using adenovirus.
Insights
Adenovirus infection impairs microRNA (miRNA) processing by VA RNAs binding to Drosha. Inhibiting VA RNA expression is crucial for successful pri-miRNA delivery using adenovirus.
Area of Science:
- Molecular Biology
- Virology
- Gene Regulation
Background:
- Adenoviruses express virus-associated (VA) RNAs that interfere with microRNA (miRNA) processing.
- The precise mechanisms affecting primary miRNA (pri-miRNA) processing during adenovirus delivery are not fully understood.
Purpose of the Study:
- To investigate the impact of adenovirus-expressed VA RNAs on pri-miRNA processing.
- To elucidate the role of VA RNAs in miRNA maturation during adenovirus-mediated gene delivery.
Main Methods:
- Co-transfection of pri-miRNA constructs with VA RNA expression plasmids.
- Generation and infection of recombinant adenovirus encoding pri-miRNA.
- Quantitative real-time PCR (RT-PCR) for miRNA, VA RNA, and pri-miRNA levels.
- RNA immunoprecipitation assays to detect Drosha-VA RNA interactions.
Main Results:
- Adenovirus delivery, unlike plasmid delivery, impaired pri-miRNA processing and miRNA maturation.
- VA RNA expression was identified as the cause of pri-miRNA processing inhibition.
- VA RNAs bind to and sequester Drosha protein, preventing pri-miRNA processing.
Conclusions:
- Adenovirus infection downregulates pri-miRNA processing via VA I-II full-length RNAs competitively binding to Drosha.
- Inhibiting adenovirus VA RNA expression is essential for effective pri-miRNA or shRNA delivery and expression.
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