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Updated: Jul 23, 2025

CD Spectroscopy to Study DNA-Protein Interactions
Published on: February 10, 2022
Impact of conformation and intramolecular interactions on vibrational circular dichroism spectra identified with
Tom Vermeyen1,2, Ana Cunha3, Patrick Bultinck4
1Department of Chemistry, University of Antwerp, Groenenborgerlaan 171, Antwerpen, 2020, Belgium. tom.vermeyen@uantwerpen.be.
Abstract:
Vibrational Circular Dichroism (VCD) spectra often differ strongly from one conformer to another, even within the same absolute configuration of a molecule. Simulated molecular VCD spectra typically require expensive quantum chemical calculations for all conformers to generate a Boltzmann averaged total spectrum. This paper reports whether machine learning (ML) can partly replace these quantum chemical calculations by capturing the intricate connection between a conformer geometry and its VCD spectrum. Three hypotheses concerning the added value of ML are tested. First, it is shown that for a single stereoisomer, ML can predict the VCD spectrum of a conformer from solely the conformer geometry. Second, it is found that the ML approach results in important time savings. Third, the ML model produced is unfortunately hardly transferable from one stereoisomer to another.
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