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Updated: Jul 23, 2025

X-Ray Crystallography to Study the Oligomeric State Transition of the Thermotoga maritima M42 Aminopeptidase TmPep1050
Published on: May 13, 2020
Structure of puromycin-sensitive aminopeptidase and polyglutamine binding
Sowmya Madabushi1, K Martin Chow1, Eun Suk Song1
1Department of Molecular and Cellular Biochemistry and Center for Structural Biology, University of Kentucky, Lexington, Kentucky, United States of America.
Abstract:
Puromycin-sensitive aminopeptidase (E.C. 3.4.11.14, UniProt P55786), a zinc metallopeptidase belonging to the M1 family, degrades a number of bioactive peptides as well as peptides released from the proteasome, including polyglutamine. We report the crystal structure of PSA at 2.3 Ǻ. Overall, the enzyme adopts a V-shaped architecture with four domains characteristic of the M1 family aminopeptidases, but it is in a less compact conformation compared to most M1 enzymes of known structure. A microtubule binding sequence is present in a C-terminal HEAT repeat domain of the enzyme in a position where it might serve to mediate interaction with tubulin. In the catalytic metallopeptidase domain, an elongated active site groove lined with aromatic and hydrophobic residues and a large S1 subsite may play a role in broad substrate recognition. The structure with bound polyglutamine shows a possible interacting mode of this peptide, which is supported by mutation.
Insights
Puromycin-sensitive aminopeptidase (PSA) crystal structure reveals a unique V-shaped architecture. This zinc metallopeptidase
Area of Science:
- Biochemistry
- Structural Biology
- Enzymology
Background:
- Puromycin-sensitive aminopeptidase (PSA) is a zinc metallopeptidase from the M1 family.
- PSA degrades bioactive peptides and proteasomal peptides, including polyglutamine.
Purpose of the Study:
- To determine the crystal structure of Puromycin-sensitive aminopeptidase (PSA).
- To elucidate the structural basis for PSA's substrate recognition and potential interactions.
Main Methods:
- X-ray crystallography was employed to determine the 3D structure of PSA at 2.3 Å resolution.
- Structural analysis focused on the enzyme's overall architecture, active site, and domain organization.
- Mutagenesis studies were performed to support structural findings regarding polyglutamine interaction.
Main Results:
- The crystal structure of PSA exhibits a V-shaped architecture with four M1 family domains, in a less compact conformation than other M1 aminopeptidases.
- A microtubule-binding sequence within the C-terminal HEAT repeat domain suggests potential tubulin interaction.
- The active site features an elongated groove with aromatic/hydrophobic residues and a large S1 subsite, indicating broad substrate recognition capabilities.
- Structural data, supported by mutation analysis, provides insight into polyglutamine binding.
Conclusions:
- The determined crystal structure of PSA offers a detailed view of its unique conformation and domain arrangement.
- The structural features suggest mechanisms for broad substrate specificity and potential interactions with cellular components like microtubules.
- This structural information is crucial for understanding PSA's biological roles and for potential therapeutic targeting.
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