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Updated: Jul 23, 2025

A Web Tool for Generating High Quality Machine-readable Biological Pathways
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SBOannotator: a Python tool for the automated assignment of systems biology ontology terms

Nantia Leonidou1,2,3,4, Elisabeth Fritze2, Alina Renz1,2,4

  • 1Computational Systems Biology of Infections and Antimicrobial-Resistant Pathogens, Institute for Bioinformatics and Medical Informatics (IBMI), Eberhard Karl University of Tübingen, 72076 Tübingen, Germany.

Bioinformatics (Oxford, England)
|July 14, 2023
PubMed
Summary

The SBOannotator tool automatically assigns Systems Biology Ontology (SBO) terms to biological models, enhancing reproducibility and analysis. This tool classifies reactions, metabolites, and genes, improving the usability of computational models in systems biology.

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