Structural basis for the ubiquitination of G protein βγ subunits by KCTD5/Cullin3 E3 ligase

Wentong Jiang1,2, Wei Wang2,3, Yinfei Kong4

  • 1Graduate School of Peking Union Medical College, Beijing 100730, China.

Science Advances
|July 14, 2023
PubMed

Insights

A novel pentameric E3 ligase, KCTD5, regulates G protein-coupled receptor (GPCR) signaling by ubiquitylating Gβγ subunits. This mechanism fine-tunes cyclic adenosine monophosphate (cAMP) signaling, revealing KCTD proteins as key GPCR regulators.

Area of Science:

  • Molecular Biology
  • Structural Biology
  • Cell Signaling

Background:

  • G protein-coupled receptor (GPCR) signaling requires precise regulation to prevent detrimental overstimulation.
  • Gβγ signaling, a component of GPCR pathways, is negatively controlled by the Cullin3 (Cul3)-dependent E3 ligase KCTD5.
  • KCTD5 targets free Gβγ for ubiquitination and subsequent degradation.

Purpose of the Study:

  • To elucidate the structural basis of KCTD5-mediated Gβγ regulation.
  • To investigate the mechanism of substrate recognition and ubiquitination by the KCTD5/Cul3 E3 ligase complex.
  • To understand the role of KCTD5 in fine-tuning GPCR signaling pathways.

Main Methods:

  • Cryo-electron microscopy (cryo-EM) was used to determine the structures of the KCTD5-Gβγ fusion complex and the KCTD7-Cul3 complex.
  • Structural analysis focused on the pentameric assembly of KCTD5 and its interaction with Gβγ subunits.
  • Functional assays assessed the impact of KCTD5-mediated ubiquitination on Gβγ and cyclic adenosine 3´,5´-monophosphate (cAMP) signaling.

Main Results:

  • The cryo-EM structures revealed a pentameric KCTD5 engaging symmetrically with five Gβγ subunits via its C-terminal domain.
  • The unique pentameric E3 ligase assembly facilitates proximity between the ubiquitin-conjugating enzyme (E2) and Gβγ modification sites.
  • Simultaneous ubiquitination of multiple Gβγ subunits by KCTD5 was observed, impacting GPCR-mediated cAMP signaling.

Conclusions:

  • KCTD5 functions as a pentameric E3 ligase, uniquely recognizing and ubiquitylating multiple Gβγ subunits.
  • This mechanism provides precise control over Gβγ signaling and fine-tunes GPCR-mediated cAMP responses.
  • The KCTD family emerges as significant regulators of GPCR signaling, with KCTD5 offering insights into unusual E3 ligase assembly and substrate recognition.

Related Concept Videos

Covalently Linked Protein Regulators02:04

Covalently Linked Protein Regulators

Proteins can undergo many types of post-translational modifications, often in response to changes in their environment. These modifications play an important role in the function and stability of these proteins. Covalently linked molecules include functional groups, such as methyl, acetyl, and phosphate groups, and also small proteins, such as ubiquitin. There are around 200 different types of covalent regulators that have been identified.
These groups modify specific amino acids in a protein....
6.9K
Regulated Protein Degradation02:58

Regulated Protein Degradation

It is vital to regulate the activity of enzymatic as well as non-enzymatic proteins inside the cell. This can be achieved either through creating a balance between their rate of synthesis and degradation or regulating the intrinsic activity of the protein. Both these regulation mechanisms play an essential role in the normal functioning of cells.
Protein degradation plays two important roles in the cells. It helps to protect cells from misfolded or damaged proteins before they lead to a...
7.4K
The Proteasome01:13

The Proteasome

Eukaryotic cells can degrade proteins through several pathways. One of the most important among these is the ubiquitin-proteasome pathway. It helps the cell eliminate the misfolded, damaged, or unwarranted cytoplasmic proteins in a highly specific manner.
In this pathway, the target proteins are first tagged with small proteins called ubiquitin. This involves participation of a series of enzymes including— E1 (ubiquitin-activating enzyme), E2 (ubiquitin-conjugating enzyme), and E3...
903
Receptor Downregulation in MVBs01:15

Receptor Downregulation in MVBs

Multivesicular bodies (MVBs) are mature endosomes that sort ubiquitinated proteins and then fuse with lysosomes to degrade the sorted proteins. Epidermal growth factor (EGF) and its receptor (EGFR) form a complex that can be internalized through endocytosis, sorted into an MVB, and later degraded.
The EGFR can initiate signaling pathways that  lead to cell proliferation, migration, and differentiation. Overexpression of EGFR  stimulates cells to proliferate. Excessive  EGFR...
2.1K
Activation and Inactivation of G Proteins01:22

Activation and Inactivation of G Proteins

Heterotrimeric G proteins are guanine nucleotide-binding proteins. As the name suggests, heterotrimeric G proteins are composed of three subunits: alpha, beta, and gamma. They remain GDP-bound or GTP-bound inside the cells and switch between inactive/active states. The Gα subunit possesses the nucleotide-binding pocket that binds guanine nucleotides and switches between GDP or GTP-bound states. In contrast, the Gꞵ and Gγ subunits are always bound together with high...
7.3K
Assembly of Signaling Complexes01:30

Assembly of Signaling Complexes

Multiprotein signaling complexes are formed in a dynamic process involving protein-protein interactions at the cytoplasmic domain of transmembrane receptors or enzymatic and non-enzymatic proteins associated with the receptor. These complexes ensure the activation and propagation of intracellular signals that regulate cell functions.
Interaction domains in cell signaling
Interaction domains recognize exposed features of their binding partners containing post-translationally modified sequences,...
5.8K