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Updated: Jul 23, 2025

In Vitro Ubiquitination and Deubiquitination Assays of Nucleosomal Histones
Published on: July 25, 2019
UBA80 and UBA52 fine-tune RNF168-dependent histone ubiquitination and DNA repair
Seong-Ok Lee1, Jessica L Kelliher2, Wan Song3
1Department of Pharmacology and Toxicology, College of Medicine, University of Arkansas for Medical Sciences, Little Rock, Arkansas, USA; Department of Radiation Oncology, College of Medicine, University of Arkansas for Medical Sciences, Little Rock, Arkansas, USA.
Abstract:
The ubiquitin signaling pathway is crucial for the DNA damage response pathway. More specifically, RNF168 is integral in regulating DNA repair proteins at damaged chromatin. However, the detailed mechanism by which RNF168 is regulated in cells is not fully understood. Here, we identify the ubiquitin-ribosomal fusion proteins UBA80 (also known as RPS27A) and UBA52 (also known as RPL40) as interacting proteins for H2A/H2AX histones and RNF168. Both UBA80 and UBA52 are recruited to laser-induced micro-irradiation DNA damage sites and are required for DNA repair. Ectopic expression of UBA80 and UBA52 inhibits RNF168-mediated H2A/H2AX ubiquitination at K13/15 and impairs 53BP1 recruitment to DNA lesions. Mechanistically, the C-terminal ribosomal fragments of UBA80 and UBA52, S27A and L40, respectively, limit RNF168-nucleosome engagement by masking the regulatory acidic residues at E143/E144 and the nucleosome acidic patch. Together, our results reveal that UBA80 and UBA52 antagonize the ubiquitination signaling pathway and fine-tune the spatiotemporal regulation of DNA repair proteins at DNA damage sites.
Insights
Ubiquitin-ribosomal fusion proteins UBA80 and UBA52 regulate DNA repair. They interact with histones and RNF168, inhibiting key steps in the DNA damage response and fine-tuning protein recruitment to damage sites.
Area of Science:
- Molecular Biology
- Cellular Biology
- Biochemistry
Background:
- The ubiquitin signaling pathway is vital for DNA damage response.
- RNF168 is a key regulator of DNA repair proteins at damaged chromatin.
- The precise regulation of RNF168 within cells remains incompletely understood.
Purpose of the Study:
- To identify novel interacting partners of RNF168 and H2A/H2AX histones.
- To elucidate the mechanism by which RNF168 activity is regulated.
- To understand the role of ubiquitin-ribosomal fusion proteins in DNA repair.
Main Methods:
- Co-immunoprecipitation assays to identify interacting proteins.
- Laser-induced micro-irradiation to create DNA damage sites.
- Western blotting and immunofluorescence to assess protein recruitment and ubiquitination.
Main Results:
- UBA80 (RPS27A) and UBA52 (RPL40) were identified as interacting proteins for H2A/H2AX histones and RNF168.
- UBA80 and UBA52 are recruited to DNA damage sites and are essential for DNA repair.
- Ectopic expression of UBA80/UBA52 inhibits RNF168-mediated ubiquitination and impairs 53BP1 recruitment.
Conclusions:
- UBA80 and UBA52 antagonize the ubiquitin signaling pathway in DNA repair.
- The ribosomal fragments S27A and L40 limit RNF168-nucleosome engagement.
- These proteins fine-tune the spatiotemporal regulation of DNA repair proteins at DNA damage sites.
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