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Updated: Jul 23, 2025

Measuring Single-Cell Mitochondrial DNA Copy Number and Heteroplasmy Using Digital Droplet Polymerase Chain Reaction
Published on: July 12, 2022
Mycoplasma DnaK increases DNA copy number variants in vivo
Francesca Benedetti1,2, Giovannino Silvestri1,3, Saman Saadat1
1Institute of Human Virology and Global Virus Network Center, University of Maryland School of Medicine, Baltimore, MD 21201.
Abstract:
The human microbiota affects critical cellular functions, although the responsible mechanism(s) is still poorly understood. In this regard, we previously showed that Mycoplasma fermentans DnaK, an HSP70 chaperone protein, hampers the activity of important cellular proteins responsible for DNA integrity. Here, we describe a novel DnaK knock-in mouse model generated in our laboratory to study the effect of M. fermentans DnaK expression in vivo. By using an array-based comparative genomic hybridization assay, we demonstrate that exposure to DnaK was associated with a higher number of DNA copy number variants (CNVs) indicative of unbalanced chromosomal alterations, together with reduced fertility and a high rate of fetal abnormalities. Consistent with their implication in genetic disorders, one of these CNVs caused a homozygous Grid2 deletion, resulting in an aberrant ataxic phenotype that recapitulates the extensive biallelic deletion in the Grid2 gene classified in humans as autosomal recessive spinocerebellar ataxia 18. Our data highlight a connection between components of the human urogenital tract microbiota, namely Mycoplasmas, and genetic abnormalities in the form of DNA CNVs, with obvious relevant medical, diagnostic, and therapeutic implications.
Insights
Mycoplasma fermentans DnaK protein causes DNA copy number variants (CNVs) and abnormal fetal development in mice. This links urogenital microbiota to genetic abnormalities like spinocerebellar ataxia 18.
Area of Science:
- Microbiology
- Genetics
- Toxicology
Background:
- The human microbiota influences cellular functions, but mechanisms remain unclear.
- Mycoplasma fermentans DnaK (HSP70 chaperone) impairs DNA integrity proteins.
Purpose of the Study:
- To investigate the in vivo effects of Mycoplasma fermentans DnaK expression.
- To establish a novel DnaK knock-in mouse model.
Main Methods:
- Generation of a DnaK knock-in mouse model.
- Array-based comparative genomic hybridization (aCGH) assay.
Main Results:
- DnaK exposure led to increased DNA copy number variants (CNVs) and chromosomal alterations.
- Reduced fertility and high rates of fetal abnormalities were observed.
- A homozygous Grid2 deletion (CNV) caused an ataxic phenotype, mimicking spinocerebellar ataxia 18.
Conclusions:
- Mycoplasmas from the urogenital microbiota are linked to genetic abnormalities (DNA CNVs).
- Findings have significant medical, diagnostic, and therapeutic implications for microbiota-associated genetic disorders.
Related Concept Videos
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Copy number variations or CNVs are the structural variations that cover more than 1kb of DNA sequence. The single nucleotide polymorphism (SNP), on the other hand, is a single nucleotide change or a point mutation that is found in more than 1%...
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The duplicated copies of the gene are called Paralogs. Paralogs with similar sequences and functions form a gene family. Across several species, a large number of gene families are...
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