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CREID - A ChemoReceptor-Effector Interaction Database.

Vincent J Peta1, Timothy Hartman1, Shiva Aryal2

  • 1Biomedical Engineering Department, University of South Dakota, Sioux Falls, SD 57107.

Biorxiv : the Preprint Server for Biology
|July 18, 2023
PubMed
Summary
This summary is machine-generated.

The ChemoReceptor-Effector Interaction Database (CREID) provides bacterial chemosensory pathway data. It aids researchers in understanding chemoreceptor and effector roles in diverse environments.

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Area of Science:

  • Microbiology
  • Biochemistry
  • Bioinformatics

Background:

  • Bacterial chemosensory systems regulate responses to environmental stimuli.
  • Understanding chemoreceptor and effector interactions is crucial for deciphering cellular behavior.
  • Existing data on these interactions is fragmented, hindering comprehensive analysis.

Approach:

  • Developed the ChemoReceptor-Effector Interaction Database (CREID).
  • Integrated protein and interaction data for bacterial chemosensory pathways.
  • Created a user-friendly website for data access and education.

Key Points:

  • CREID contains data on 2,440 proteins from 7 bacterial families.
  • Includes 1,996 documented chemoeffector interactions.
  • Provides terms and information on complex chemosensory networks.

Conclusions:

  • CREID serves as a valuable resource for studying bacterial chemosensation.
  • Facilitates research and collaboration in understanding environmental responses.
  • Enhances knowledge of intricate biological networks through accessible data.